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39 Open 46 Closed
39 Open 46 Closed
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Issues list

Why did you use control sample ids in loh for BRCA and GBM data, not use in Meningioma dataset?
#87 opened Nov 19, 2024 by kadersaribulak
Error in plotBAFInSeperatePages and plotSingleCellLargeScaleEventHeatmap
#86 opened Oct 16, 2024 by mehlu22
Error in running Casper
#85 opened Oct 10, 2024 by mehlu22
Batch correction for raw scRNAseq from multiple patients
#84 opened Aug 30, 2024 by danyangli123
phylogenetic tree/tumor subclone
#83 opened Mar 4, 2024 by Mashuaiii
how to create geno.rna object in https://rpubs.com/akdes/673120
#82 opened Feb 17, 2024 by BioAmelie
2
Using CaSpER with single bulk RNA-Seq sample
#81 opened Dec 26, 2023 by hkarakurt8742
2
CNV score
#80 opened Aug 23, 2023 by alkurowska
Excluding/keeping reads from normal cells in the bam for BAFExtract
#79 opened Jun 9, 2023 by kzb193
runCaSpER error
#78 opened Nov 25, 2022 by baoyl818
2
plotHeatmap function can only show cell ids instead of patient ids (group names)
#77 opened Sep 15, 2022 by lifan18
1
outputs from bulk sequencing
#76 opened Aug 17, 2022 by pirlowang
Will there be an update to support mm10?
#74 opened Jul 25, 2022 by thestarocean
runCaSpER error
#72 opened May 23, 2022 by SaritaPoonia
1
Negative TPR in calcROC() calcultation
#71 opened Mar 23, 2022 by Fabian-RY
runCaSpER Error
#70 opened Mar 21, 2022 by shalbahl
how to prepare the BAF file for single cell data
#69 opened Mar 7, 2022 by xinmiaoyan
Non model species using casper
#67 opened Oct 3, 2021 by reuvenieli00
3
generateAnnotation returning curl error
#66 opened Sep 20, 2021 by Lakshya3141
2
regarding object creation
#65 opened Aug 24, 2021 by guttula91
Running CaSpER without Recerence Normal samples?
#64 opened Jul 2, 2021 by lmasatti
3
error of loh <- readBAFExtractOutput
#62 opened Jun 10, 2021 by deb0612
7
Does CaSpER adaptable to small sample size such as 10 cells?
#61 opened May 31, 2021 by wangteng0605
How can we get more stringent CNV calls?
#59 opened Apr 14, 2021 by AidenSb
Error in if (abs(loglik[i] - loglik[i - 1]) < 0.1 || loglik[i] < loglik[i - : missing values where TRUE/FALSE values are required
#58 opened Apr 14, 2021 by wqy399
4
ProTip! Exclude everything labeled bug with -label:bug.