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Make refactor#164

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averagehat wants to merge 27 commits intotestingVDBWRAIR/ngs_mapper:testingfrom make-refactorVDBWRAIR/ngs_mapper:make-refactorCopy head branch name to clipboard

+40,939-12

Commits

Commits on Oct 27, 2015

• Makefile work

  averagehat

  committed
  a40364e

• added read-group file

  averagehat

  committed
  98ac7e0

• extra makeifle

  averagehat

  committed
  ef5780b

Commits on Oct 28, 2015

• everything up to tagreads in Makefile

  averagehat

  committed
  35c5945

• made converting to sanger safer

  averagehat

  committed
  3633a9a

• cleaning makefile

  averagehat

  committed
  170b209

• updated Makefile notes

  averagehat

  committed
  bf211ba

Commits on Oct 29, 2015

• added all stages from runsample to Makefile

  averagehat

  committed
  c985ad3

• paired/unpiared fix inprogress

  averagehat

  committed
  6afc21e

• restructured bam creation with possible empyt unpaired.fastq

  averagehat

  committed
  26d7461

• experimental make templating

  averagehat

  committed
  fd52d34

• More notes

  averagehat

  committed
  db36540

• added ngs_filter step

  averagehat

  committed
  8083c38

• added toolz to requirements

  averagehat

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  170f22c

• first working version of generated makefile

  averagehat

  committed
  7301f4f

• Makefile fixes and simple debugging added in nfilter

  averagehat

  committed
  3ebf78b

• fixing various bugs

  averagehat

  committed
  602af5b

• added example generated makefile

  averagehat

  committed
  f3650e4

Commits on Oct 30, 2015

• mostly working

  averagehat

  committed
  4b20349

• Merge branch 'make-refactor' of https://github.com/VDBWRAIR/ngs_mapper into make-refactor

  Show description for e8af135
  averagehat

  committed
  e8af135

• added gmsl (GNU Make Standard Library) gsml.sourceforge.net

  averagehat

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  c09fc96

• added commandline interface to make.py

  averagehat

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  ef94004

• added jinja2 to requirements

  averagehat

  committed
  76a4897

• changed conversion script name

  averagehat

  committed
  beba3c0

• not workign

  averagehat

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  32ef800

• Template produces working dry run with make -n

  averagehat

  committed
  7ec4fc1

• fixing scripts.py conversion

  averagehat

  committed
  b1ff414