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@VDBWRAIR

Viral Diseases Branch - WRAIR/NMRC

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  1. ngs_mapper ngs_mapper Public

    Genome Mapping Pipeline

    Python 8 10

  2. pyBWA pyBWA Public

    Python libraries to interact with BWA mapper

    Python 5 3

  3. bio_bits bio_bits Public

    Various bioinformatics scripts

    Python 3 4

  4. MutationCount MutationCount Public

    Count Mutations between a reference sequence and aligned sequences

    Python 1 2

  5. pathdiscov pathdiscov Public

    Pathogen Discover Pipeline

    C 1 1

  6. subsamplebam subsamplebam Public

    Hopefully will allow you to randomly subsample a bam to get even depth

    Python 1 4

Repositories

Showing 10 of 46 repositories
  • ngs_mapper Public

    Genome Mapping Pipeline

    VDBWRAIR/ngs_mapper’s past year of commit activity
    Python 8 GPL-2.0 10 35 7 Updated Dec 14, 2023
  • umd-consensus Public
    VDBWRAIR/umd-consensus’s past year of commit activity
    Python 0 0 1 0 Updated Mar 11, 2020
  • vartable Public
    VDBWRAIR/vartable’s past year of commit activity
    Python 0 4 8 4 Updated Jan 28, 2020
  • vdbwrair-torque Public

    Torque puppet configuration using src build

    VDBWRAIR/vdbwrair-torque’s past year of commit activity
    Puppet 0 Apache-2.0 0 4 1 Updated Jan 4, 2020
  • novaseq-sync Public
    VDBWRAIR/novaseq-sync’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Aug 8, 2019
  • ngs-hjf Public
    VDBWRAIR/ngs-hjf’s past year of commit activity
    0 0 0 0 Updated Apr 17, 2019
  • bioframework Public
    VDBWRAIR/bioframework’s past year of commit activity
    RobotFramework 0 GPL-2.0 0 4 4 Updated Apr 17, 2017
  • path-pipe Public
    VDBWRAIR/path-pipe’s past year of commit activity
    0 0 0 0 Updated Dec 6, 2016
  • bio_bits Public

    Various bioinformatics scripts

    VDBWRAIR/bio_bits’s past year of commit activity
    Python 3 GPL-2.0 4 14 7 Updated Aug 18, 2016
  • pyfi Public Forked from Cipherwraith/json-python

    PYthon Function Interface for haskell

    VDBWRAIR/pyfi’s past year of commit activity
    Haskell 0 MIT 5 0 0 Updated Jun 21, 2016
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