Code

Maaps#52

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Merged

necrolyte2 merged 44 commits intodevVDBWRAIR/bio_bits:devfrom maapsVDBWRAIR/bio_bits:maapsCopy head branch name to clipboardOct 30, 2015

+925-5

Commits

Commits on May 27, 2015

• Added initial ctleptop script #22

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• Test data for ctleptop #22

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Commits on Jun 10, 2015

• Added a test code #22

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• commented unnecssary routines #22

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• added ctleptop to setup.py #22

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Commits on Jun 17, 2015

• Updated the final tabular print out #22

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Commits on Jul 2, 2015

• Merge pull request #38 from VDBWRAIR/dev

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Commits on Jul 20, 2015

• Added multiple fasta test file #24

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Commits on Jul 28, 2015

• support multi-seq-file

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Commits on Aug 3, 2015

• Working version for multifasta

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• Commented testing lines

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Commits on Aug 4, 2015

• Cleaned the code, working for multiple fastafile

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Commits on Aug 6, 2015

• Updated the setup.py #24

  

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• Updated the ctleptopy, support multifasta #24

  

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• Updated the test_ctleptopy, support multifasta #24

  

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Commits on Aug 10, 2015

• updated the test script #24

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• Updated main script #24

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• Updated the test script #24

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• Updated the requirment file #24

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• Added the diverse test data #24

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Commits on Aug 11, 2015

• updated the test_ctleptop.py #24

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• Merged two test file with different complexity #24

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• Updated test_ctleptop.py still 43% coverage #24

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Commits on Aug 12, 2015

• Increased test coverge to 43 #24

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Commits on Aug 13, 2015

• Mock main function #24

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Commits on Aug 14, 2015

• Added additional test #24

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Commits on Aug 21, 2015

• Added help message #24

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• Merge remote branch 'upstream/dev' into maaps

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• Added function to accept list of degen positions for maaps

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• Added (optional) degen positions to ctleptop output

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• bare-bones test for ctleptop

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• various fixes

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• fixed incorrect imports

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• Update requirements.txt

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• code cleaning

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• fix filepath

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• added zip

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• reverted travis

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• Merge branch 'dev' of https://github.com/VDBWRAIR/bio_pieces into maaps

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• Merge branch 'maaps' of https://github.com/VDBWRAIR/bio_pieces into maaps

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Commits on Aug 26, 2015

• fixes problem listed in PR #52 with AA index

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Commits on Oct 28, 2015

• replaced ctletop test file for pybot test

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• changed pybot name

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• fixed float/integer division error in py3

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