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Convert ambiguous nucleotide codon to extended aa code #24

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wants to merge 26 commits into from
Closed

Convert ambiguous nucleotide codon to extended aa code #24

wants to merge 26 commits into from

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demis001
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Convert ambiguous nucleotide codon to extended aa code and report the location of mixed amino acid as a summary. It is a work in progress.

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Coverage Status

Coverage decreased (-15.53%) to 73.88% when pulling 4f611ff on demis001:master into 7e6af18 on VDBWRAIR:master.

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Coverage Status

Coverage decreased (-15.53%) to 73.88% when pulling 4f611ff on demis001:master into 7e6af18 on VDBWRAIR:master.

@necrolyte2
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I think you forgot to add your tests to the pull request

@demis001
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It is a work in progress...

On Wed, May 27, 2015 at 9:23 AM, Tyghe Vallard [email protected]
wrote:

I think you forgot to add your tests to the pull request

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#24 (comment).

demis001 and others added 23 commits June 10, 2015 16:31
@demis001
Added a test code VDBWRAIR#22
eb77e21
@demis001
commented unnecssary routines VDBWRAIR#22
2622d0d
@demis001
added ctleptop to setup.py VDBWRAIR#22
02f8ff7
@demis001
Updated the final tabular print out VDBWRAIR#22
521cb15
@demis001
Added multiple fasta test file VDBWRAIR#24
ae16442
@demis001
support multi-seq-file
199464a
@demis001
Working version for multifasta
847e715
@demis001
Commented testing lines
b85d55c
@demis001
Cleaned the code, working for multiple fastafile
309ba0c
Updated the setup.py VDBWRAIR#24
bf6a2f0
Updated the ctleptopy, support multifasta VDBWRAIR#24
1e7ab5f
Updated the test_ctleptopy, support multifasta VDBWRAIR#24
15352a0
@demis001
updated the test script VDBWRAIR#24
8665d78
@demis001
Updated main script VDBWRAIR#24
aace281
@demis001
Updated the test script VDBWRAIR#24
a3ba5cc
@demis001
Updated the requirment file VDBWRAIR#24
bd6e974
@demis001
Added the diverse test data VDBWRAIR#24
0e4934c
@demis001
updated the test_ctleptop.py VDBWRAIR#24
3c895a2
@demis001
Merged two test file with different complexity VDBWRAIR#24
46cd779
@demis001
Updated test_ctleptop.py still 43% coverage VDBWRAIR#24
b7eff72
@demis001
Increased test coverge to 43 VDBWRAIR#24
12098a8
@demis001
Mock main function VDBWRAIR#24
cb42f4d
@demis001
Added additional test VDBWRAIR#24
1aed61f
@averagehat averagehat mentioned this pull request Aug 20, 2015
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@averagehat
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See #52

@averagehat averagehat closed this Oct 28, 2015
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4 participants
@demis001 @coveralls @necrolyte2 @averagehat