Fix: annotate model after .mat and .yml export, but before .xml export #7
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Main improvements in this PR:
As described in Issue 16 of Mouse-GEM and addressed in PR 18 of that same repo, the master script for regenerating the model files (
masterScriptZebrafishGEM.min this repo) is modified such that the addition of non-standard metabolite and reaction annotation fields are only added to the SBML (.xml) version of the model. The.matand.ymlversions should not contain these fields.I hereby confirm that I have:
developas a target branch