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Fix: annotate model after .mat and .yml export, but before .xml export #7

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Oct 10, 2022
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Fix: annotate model after .mat and .yml export, but before .xml export #7

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4 changes: 2 additions & 2 deletions code/masterScriptZebrafishGEM.m
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Original file line number Diff line number Diff line change
Expand Up @@ -43,9 +43,9 @@
exportTsvFile(metAssoc,'../model/metabolites.tsv');
end

zebrafishGEM = annotateGEM(zebrafishGEM,'../model',{'rxn','met'}); % add annotation data to structure
zebrafishGEM.id = regexprep(zebrafishGEM.id,'-',''); % remove dash from model ID since it causes problems with SBML I/O
save('../model/Zebrafish-GEM.mat', 'zebrafishGEM');
exportYaml(zebrafishGEM, '../model/Zebrafish-GEM.yml');
zebrafishGEM = annotateGEM(zebrafishGEM,'../model',{'rxn','met'}); % add annotation data to structure
zebrafishGEM.id = regexprep(zebrafishGEM.id,'-',''); % remove dash from model ID since it causes problems with SBML I/O
exportModel(zebrafishGEM, '../model/Zebrafish-GEM.xml');