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Fix Duplicate Octanoyl-CoA Beta-Oxidation Reactions #751

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merged 8 commits into from
Dec 23, 2023

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Devlin-Moyer
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@Devlin-Moyer Devlin-Moyer commented Dec 8, 2023

Main improvements in this PR:

As proposed in #747:

  • Removes MAR06329 for being a duplicate of MAR03149 + MAR03150 + MAR03151 + MAR03153
  • Removes MAR06283 for being a duplicate of MAR03156 + MAR03157 + MAR03158 + MAR03160
  • Removes MAR06479MAR06279 for being a duplicate of MAR03157 + MAR03158 + MAR03160
  • Removes MAR05449 for being a duplicate of MAR03163 + MAR03164 + MAR03166 + MAR03884
  • Removes MAR01009 for being a duplicate of MAR03149 + MAR03150 + MAR03151 + MAR03153 + MAR03156 + MAR03157 + MAR03158 + MAR03160 + MAR03163 + MAR03164 + MAR03166 + MAR03885

I hereby confirm that I have:

  • Tested my code on my own computer for running the model
  • Selected develop as a target branch
  • Any removed reactions and metabolites have been moved to the corresponding deprecated identifier lists

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impressive work!

"MAR03156" "R04751" "r1450;FAOXC6C4m;FAOXC80" "" "" "R-HSA-77327" "HMR_3156;r1450;FAOXC6C4m;FAOXC80" "MNXR109093" "HMR_3156" "RCR12653" "" 0 "" "RHEA:31207" "HMR_3156;r1450;MAR02372;FAOXC6C4m;MAR06283;FAOXC80;MAR01009"
"MAR03157" "R04749" "FAOXC6C4m;FAOXC61C4m;FAOXC80" "R04749M" "r0734" "" "r0734;FAOXC6C4m;FAOXC61C4m;FAOXC80" "MNXR97886" "HMR_3157" "RCR12654" "" 0 "" "RHEA:30547" "HMR_3157;FAOXC6C4m;MAR06283;FAOXC61C4m;MAR06279;FAOXC80;MAR01009"
"MAR03158" "R04748" "FAOXC6C4m;FAOXC61C4m;FAOXC80" "R04748M" "r0733" "R-HSA-77323" "r0733;FAOXC6C4m;FAOXC61C4m;FAOXC80" "MNXR100543" "HMR_3158" "RCR12655" "" 0 "" "RHEA:31143" "HMR_3158;FAOXC6C4m;MAR06283;FAOXC61C4m;MAR06279;FAOXC80;MAR01009"
"MAR03160" "R01177" "FAOXC6C4m;FAOXC61C4m;FAOXC80" "R01177M" "r0287" "R-HSA-77321" "r0287;FAOXC6C4m;FAOXC61C4m;FAOXC80" "MNXR95196" "HMR_3160" "RCR12656" "" 0 "" "RHEA:31111" "HMR_3160;FAOXC6C4m;MAR03160;FAOXC61C4m;MAR06279;FAOXC80;MAR01009"
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the last column of this row should be changed from ""HMR_3160;FAOXC6C4m;MAR03160;FAOXC61C4m;MAR06279;FAOXC80;MAR01009"" to ""HMR_3160;FAOXC6C4m;MAR06283;FAOXC61C4m;MAR06279;FAOXC80;MAR01009""

@haowang-bioinfo haowang-bioinfo merged commit 00a9237 into develop Dec 23, 2023
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@haowang-bioinfo haowang-bioinfo deleted the fix/octanoyl_beta_ox_dupes branch December 23, 2023 09:30
@JHL-452b JHL-452b mentioned this pull request May 30, 2024
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