Mergeback of FEATURE_chunk_control branch
#5588
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* Dask chunking control for netcdf loading. * renamed loader * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix indentation error, perhaps also docstring error * fixed result error in loader, and set tests to treat as big files * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * trial and error, solve non iterable tuple 1.0 * trial and error, solve non iterable tuple 2.0 (used if var is none: instead of if var: ) * commented out docstring * fixed mock 'no name' failure * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed precommit issues * corrected docstrings as per review comments * Removed unnecessary line Co-authored-by: Martin Yeo <[email protected]> --------- Co-authored-by: Patrick Peglar <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Martin Yeo <[email protected]>
* added modes * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * added as_dask mode * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * cleaned up enum and as_dask, as per review comments * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * corrected to in final place * unindented lazy_param assignment one indent --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
trexfeathers
added
Type: Merge Back
trexfeathers
changed the title
FEATURE_chunk_control branch
trexfeathers
commented
Nov 20, 2023
trexfeathers
commented
Nov 20, 2023
* converted tests to pytest, added neg_one, and incomplete from_file and as_dask tests * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * added from_file test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * added mocking tests * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * trial and error with mocks and patches, may or may not work * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * converted Mock to patch in as_dask test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * review comment changes * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * pre commit fixes * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * review comments, and added test in test__get_cf_var_data() * added in another test * added tests and fixed review comments * added AuxCoord test --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #5588 +/- ##
==========================================
+ Coverage 89.63% 89.68% +0.04%
==========================================
Files 90 90
Lines 22711 22815 +104
Branches 5418 5445 +27
==========================================
+ Hits 20358 20462 +104
Misses 1619 1619
Partials 734 734 ☔ View full report in Codecov by Sentry. |
* Disallow chunks=None in optimum_chunksize. * Clearer docstrings. * Corrected docstring.
This was referenced Nov 21, 2023
* init PR, skeleton TP * whoops, missed the TP. * fixed doctests in rst file * correct triple chevron to elipses * updated set doctest to better show functionality * removed in-progress doctest code * Review comments, part 1 * Review comments, part 2 * changed numpy docs dict * wait, this way is better * fixed linkcheck failures (maybe) * fixed :meth: * fixed a couple doc bits * hopefully fixed doctests * newest review comments * fixed rendering, and wording in docstring * fixed docstring numpyness
* written whatsnew entry * added ref * moved label to before title
ESadek-MO
approved these changes
Nov 23, 2023
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Been reviewed PR by PR, so happy for this to go in. Thanks @trexfeathers
tkknight
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Nov 27, 2023
* upstream/main: Mergeback of `FEATURE_chunk_control` branch (SciTools#5588) [CI Bot] environment lockfiles auto-update (SciTools#5547) Mergeback of "Feature _split_attrs" branch (SciTools#5152) add whatsnew (SciTools#5596) Refactor area weighted regridding, improve performance (SciTools#5543) Allowing exemption to axis guessing on coords (SciTools#5551)
tkknight
added a commit
to tkknight/iris
that referenced
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Dec 6, 2023
* main: DOCS: Numpydocs1 (SciTools#5578) add links to scitools-classroom repo. (SciTools#5609) Feedstock rc branch management in do-nothing script (SciTools#5515) Relocated the Technical Papers documentation to Further Topics. (SciTools#5602) Fix pp save of realization coordinate (SciTools#5568) Bump actions/checkout from 3 to 4 (SciTools#5460) Bump actions/github-script from 6 to 7 (SciTools#5580) Bump conda-incubator/setup-miniconda from 2 to 3 (SciTools#5607) CI: specify matplotlib-base (SciTools#5606) Mergeback of `FEATURE_chunk_control` branch (SciTools#5588) [CI Bot] environment lockfiles auto-update (SciTools#5547) Mergeback of "Feature _split_attrs" branch (SciTools#5152) add whatsnew (SciTools#5596) Refactor area weighted regridding, improve performance (SciTools#5543) Allowing exemption to axis guessing on coords (SciTools#5551)
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🚀 Pull Request
Description
Still a draft at this time. Raised to test merge-ability, have an account of the full diff, and to get a coverage report.
Consult Iris pull request check list