Skip to content

Issues: Plant-Food-Research-Open/genepal

[Project] Enhanced debug profile
#96 opened Nov 14, 2024 by GallVp
Open
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

35 Open 58 Closed
35 Open 58 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Final annotation protein sequence length includes exceedingly short proteins bug Something isn't working
#125 opened Dec 8, 2024 by rosscrowhurst 0.6.0
1
@GallVp
9
Pipeline report fails with large heatmaps bug Something isn't working
#124 opened Dec 5, 2024 by GallVp 0.6.0
1
@GallVp
1
Pipeline report module gets killed due to Out of Memory on SLURM bug Something isn't working
#123 opened Dec 5, 2024 by GallVp 0.6.0
1
@GallVp
Pipeline fails at TSEBRA step if non-coding transcripts are present in the Liftoff reference GFF bug Something isn't working
#121 opened Dec 4, 2024 by GallVp 0.6.0
1
@GallVp
Pipeline fails at TSEBRA step if snoRNA features are present in the Liftoff reference GFF bug Something isn't working
#120 opened Dec 4, 2024 by GallVp 0.6.0
1
@GallVp
1
Save CDNA and CDS and files along with proteins file enhancement New feature or request
#118 opened Dec 4, 2024 by GallVp 0.6.0
1
@liamlelievre
Filter a gtf file to keep only regions that are located on a chromosome represented in a given fasta file enhancement New feature or request
#116 opened Dec 1, 2024 by GallVp
Update AGAT modules enhancement New feature or request
#107 opened Nov 20, 2024 by GallVp
AnnotationDB creation enhancement New feature or request
#105 opened Nov 19, 2024 by jasonshiller
2
Investigate E2P2 enhancement New feature or request
#104 opened Nov 19, 2024 by GallVp
Report number of genes/features included/excluded at each step enhancement New feature or request
#97 opened Nov 14, 2024 by GallVp
[Project] Enhanced debug profile
#96 opened Nov 14, 2024 by GallVp
2 tasks
Keep filtered genes enhancement New feature or request
#95 opened Nov 14, 2024 by jasonshiller
3
What happens when the same TE library is supplied for multiple assemblies? enhancement New feature or request
#94 opened Nov 14, 2024 by GallVp
Allow all in the rnaseq sheet enhancement New feature or request
#93 opened Nov 14, 2024 by GallVp
Investigate/include GeMoMa? enhancement New feature or request
#92 opened Nov 13, 2024 by CeciliaDeng
1
Liftoff allows single base introns bug Something isn't working
#89 opened Nov 7, 2024 by GallVp
@GallVp
4
Investigate HiTE enhancement New feature or request
#86 opened Nov 6, 2024 by GallVp
2
Add get_homologues-est enhancement New feature or request
#85 opened Nov 3, 2024 by GallVp
1
Misleading errors when the headers are missing in input CSVs bug Something isn't working
#84 opened Oct 30, 2024 by GallVp
@rosscrowhurst
Add Entrez mapping awaiting-feedback Awaiting more information from the user discussion needed Further discussion is needed enhancement New feature or request Stale
#80 opened Oct 29, 2024 by CeciliaDeng
3
annotate transcriptome assembly discussion needed Further discussion is needed enhancement New feature or request
#79 opened Oct 29, 2024 by CeciliaDeng
1
Failure at tsebra step bug Something isn't working
#77 opened Oct 28, 2024 by GallVp 0.5.1
@GallVp
3
Lifton vs Liftoff discussion needed Further discussion is needed enhancement New feature or request
#76 opened Oct 28, 2024 by annabel-NZ
1
Investigate wurmlab/genevalidator enhancement New feature or request
#69 opened Oct 16, 2024 by GallVp
ProTip! What’s not been updated in a month: updated:<2024-11-22.