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Version 11.1 #2527

Merged
merged 74 commits into from
Feb 1, 2023
Merged

Version 11.1 #2527

merged 74 commits into from
Feb 1, 2023

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msevestre
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msevestre and others added 30 commits July 9, 2022 00:59
* Bump version

* Also bump version in project file

* Fixes #2253 initial concentraiton error

* Fixes #2253 initial concentration error
* Adding calculations for ranges

* renaming test so it reflects its new meaning

* Just testing what if not setting the total drug mass per body weight

* Revert "Just testing what if not setting the total drug mass per body weight"

This reverts commit 36e8ac6.

* Showing global PK parameters on population

* DDI

* Tests build

* Specifying generic type

* Testing that simple global pk parameters are calculated

* Adding more tests

* Misc changes plus some extra tests

* Fixing test: using correct compound name

* Using aggregation functions already defined

* making column selection methods abstract

* Filter body weight dependent rows from population PK values (#2238)

* Filter body weight dependent rows from population PK values

* Using values instead of names to filter

* rewriting for easier reading

* rephrasing for better reading

* No need for the two methods anymore

* default outputs on population simulation

* removing action since it is the same now for both

* Adding two ways of aggregate on populations (#2239)

* UI changes

* Without aggregation

* Working with loooots of code duplication :(

* Logic implemented using stored PKValues per individual

* Removing last code duplication and unused error variable

* Using real actual administration mode

* simplifying names

* Misc changes

* Testing float matrix

* Testing aggregate function

* Revert "simplifying names"

This reverts commit f3158d5.

* Making names the same for individual and populations

* Binding to an unique DTO

* Fixing test

* Making sure data is sorted

* Refactoring upper/lower suffixes

* Renaming pks

* Some code beautifying and a more robust cast to PopulationSimulation

* Adding tooltips

* Changes from code review

* partial commit before rebasing

* Show message when no pk values

* Toogle components depending on data

* Using built in function

* Bind on tab changed to refresh to current data

* Refactoring logic from ChartsDataCreator

* Calculate bioavailability

* some misc changes

* Moving logic from presenter

* refactoring

* missing file from last commit

* Renaming xtraTabPages

* Adding icons & undoing a bug from last commit

* Rephrasing label a bit.

* Showing label "Values calculated for the mean population curve"

* Adding comment to explain why the need for rebinding

* Update documentation

* Make test run again

* Fixes alignment issues

* Fixes remaining bugs and simplify code a bit. Still loads that could be done to simplify

* Simplify even more

* Simplify even more

Co-authored-by: Michael Sevestre <[email protected]>
* Fixes #2249 scale button

* Fixes #2249 scale button
* Fixes #2251 also load metabolites

* Fixes failing test

* Fixes PR comments
Fixes #2282 PK-Sim DB: unused table in the query
Fixes #2283 PK-Sim DB: missing primary key

Co-authored-by: Yuri05 <[email protected]>
* WIP #2248:

* WIP #2248 empty spaces

* Fixes #2279, Fixes #2277, Fixes #2248
* Update to latest core

* once again
* Fixes #2254 refresh problem

* Fixes #2254 refresh problem
* WIP #2302 add failing tests

* Update database

* Fixes #2302 bug influx

* Fixes #2302 bug influx

* Fixes #2310 remove global column

* Fixes #2310 remove global column

* Make test pass again

* Fixes #2302 bug influx
* Fixes #2328 tab_known_transporters_containers: missing FKs/Constraints

* Fixes #2330 'Influx Lumen To Mucosa/Intracellular'

* Fixes #2329 icon text DEFAULT Influx

* DB diff+dump

Co-authored-by: Yuri05 <[email protected]>
)

* Fixes #2331 Rename tabs for pk analysis on population simulations

* Fixes #2331 Rename tabs for pk analysis on population simulations

* Fixes #2331 Rename tabs for pk analysis on population simulations

* Some additional objects that still used 'OnCurves' and 'OnIndividual' terminology

Co-authored-by: Robert McIntosh <[email protected]>
…ne compound, even if multiple are selected (#2340)
* Fixes #2323 PopSim: PK-Parameters for range 2.5%-97.5% are, only 2.5% is shown

* Fixes #2323 PopSim: PK-Parameters for range 2.5%-97.5% are, only 2.5% is shown

* Fixes #2323 PopSim: PK-Parameters for range 2.5%-97.5% are, only 2.5% is shown
* Fixes #2316 bb markdown difference

* Fixes #2316 bb markdown difference
msevestre and others added 29 commits November 11, 2022 15:17
…tencies-in-comparison-chart

2419 inconsistencies in comparison chart
* update core to latest

* Update core

Co-authored-by: Michael Sevestre <[email protected]>
* Make PKSim compile again

* Fixes serializer already registered
* waiting for Core PR to be accepted

* nugets updated

* updating nuget
#2459)

* Fixes #2439 Misleading info in global POP PK Analysis if no parameters can be calculated

* PR feedback
* Fixes #2255 resetting concentration issue

* Small update to stay symetrical

* Update MoleculeExpressionTask.cs

* Modify the comment to reflect population

Co-authored-by: Robert McIntosh <[email protected]>
* Fixes #2516 Cannot run population simulations imported from pkml

* PR feedback
#2520)

* Fixes #2518 11.1 Cannot show PK-Analysis in a population simulations imported from pkml

* PR feedback

* PR feedback
* Updated OSPSuite.Core and OSPSuite.BuildingBlockTemplates

* Updated OSPSuite.Core again

Co-authored-by: Yuri05 <[email protected]>
@msevestre msevestre merged commit c9101a9 into master Feb 1, 2023
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5 participants