2328 db #2333
2328 db #2333
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| INSERT INTO tab_active_transport_types VALUES('BiDirectional'); | ||
| INSERT INTO tab_active_transport_types VALUES('Efflux'); | ||
| INSERT INTO tab_active_transport_types VALUES('Influx'); | ||
| INSERT INTO tab_active_transport_types VALUES('PgpLike'); |
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Added the new table tab_active_transport_types with the 4 currently available active transport types.
So actually it's just a subset of tab_process_types
| CREATE TABLE [tab_known_transporters]( | ||
| [gene] text REFERENCES [tab_protein_names]([protein]) ON UPDATE CASCADE, | ||
| [species] text REFERENCES [tab_species]([species]) ON UPDATE CASCADE, | ||
| [transport_type] text REFERENCES [tab_active_transport_types]([transport_type]) ON UPDATE CASCADE, |
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Added FKs for gene and transport_type
| [membrane] text, | ||
| CONSTRAINT [tab_known_transporters_containers_pk] PRIMARY KEY([gene], [species], [container_type], [container_name]), | ||
| CONSTRAINT [tab_known_transporters_containers_tab_known_transporters_gene_species_fk] FOREIGN KEY([gene], [species]) REFERENCES [tab_known_transporters]([gene], [species]) ON UPDATE CASCADE, | ||
| FOREIGN KEY([container_type], [container_name]) REFERENCES [tab_container_names]([container_type], [container_name]) ON UPDATE CASCADE, |
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Added FK for container_type+container_name
| CONSTRAINT [tab_known_transporters_containers_pk] PRIMARY KEY([gene], [species], [container_type], [container_name]), | ||
| CONSTRAINT [tab_known_transporters_containers_tab_known_transporters_gene_species_fk] FOREIGN KEY([gene], [species]) REFERENCES [tab_known_transporters]([gene], [species]) ON UPDATE CASCADE, | ||
| FOREIGN KEY([container_type], [container_name]) REFERENCES [tab_container_names]([container_type], [container_name]) ON UPDATE CASCADE, | ||
| CHECK(membrane IN ('Apical', 'Basolateral', 'BloodBrainBarrier', 'Tissue'))); |
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Added membrane as constraint.
Was thinking about defining another new table (membrane_types or so) - but currently this is the only place where the membrane is used, so I kept is as check constraint.
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In fact, if we agree to remove BloodBrainBarrier and TIssue and use Apical and Basolateral, then we can only keep the two entries here
| [transport_direction] text CONSTRAINT [tab_transport_directions_pk] PRIMARY KEY, | ||
| [display_name] text NOT NULL, | ||
| [description] text NOT NULL, | ||
| [icon] text); |
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removed the weird default value from the icon column
| CONSTRAINT [tab_known_transporters_containers_pk] PRIMARY KEY([gene], [species], [container_type], [container_name]), | ||
| CONSTRAINT [tab_known_transporters_containers_tab_known_transporters_gene_species_fk] FOREIGN KEY([gene], [species]) REFERENCES [tab_known_transporters]([gene], [species]) ON UPDATE CASCADE, | ||
| FOREIGN KEY([container_type], [container_name]) REFERENCES [tab_container_names]([container_type], [container_name]) ON UPDATE CASCADE, | ||
| CHECK(membrane IN ('Apical', 'Basolateral', 'BloodBrainBarrier', 'Tissue'))); |
| CONSTRAINT [tab_known_transporters_containers_pk] PRIMARY KEY([gene], [species], [container_type], [container_name]), | ||
| CONSTRAINT [tab_known_transporters_containers_tab_known_transporters_gene_species_fk] FOREIGN KEY([gene], [species]) REFERENCES [tab_known_transporters]([gene], [species]) ON UPDATE CASCADE, | ||
| FOREIGN KEY([container_type], [container_name]) REFERENCES [tab_container_names]([container_type], [container_name]) ON UPDATE CASCADE, | ||
| CHECK(membrane IN ('Apical', 'Basolateral', 'BloodBrainBarrier', 'Tissue'))); |
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In fact, if we agree to remove BloodBrainBarrier and TIssue and use Apical and Basolateral, then we can only keep the two entries here
OK, |
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We use apical or basolateral (tissue means one or the other, I added it as comment in the code). Since it's only used in a switch statement...I just need to change it and done |
Where is it? |
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ok, merging for now. |
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