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Reduces overly-pedantic casting in the public headers #644

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merged 32 commits into from
May 15, 2021

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@derobins derobins commented May 15, 2021

Removes unnecessary casting of integer types in the public headers. Casting small integer values to size_t, etc. is overly pedantic and raises old-style-cast warnings when the headers are included in C++ programs.

github-actions bot and others added 30 commits March 19, 2021 17:04
@@ -25,7 +25,7 @@
/*****************/

/* Default value for "no event set" / synchronous execution */
#define H5ES_NONE (hid_t)0
#define H5ES_NONE 0 /* (hid_t) */

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I left the type in a comment so that the integer is less of a magic number.

#define H5D_CHUNK_CACHE_W0_DEFAULT (-1.0f)
#define H5D_CHUNK_CACHE_NSLOTS_DEFAULT SIZE_MAX
#define H5D_CHUNK_CACHE_NBYTES_DEFAULT SIZE_MAX
#define H5D_CHUNK_CACHE_W0_DEFAULT (-1.0)

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Casting -1 to an unsigned integral type is an unnatural subversion of the type system and unnecessary. It's more intentional to use SIZE_MAX, etc.

@derobins derobins changed the title Reduces pedantic public casting Reduces pedantic casting in the public headers May 15, 2021
@derobins derobins changed the title Reduces pedantic casting in the public headers Reduces overly-pedantic casting in the public headers May 15, 2021
@lrknox lrknox merged commit 6c170c4 into HDFGroup:develop May 15, 2021
lrknox added a commit that referenced this pull request Jul 16, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b504.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e6
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f50407
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9c
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcb
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23a
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b504.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* (fix) Segmentation fault when using a compound type. (#143)

* (fix) Segmentation fault when using a compound type.

In the case when a compounded attribute is written to dataset
followed by writing the data with a data transform function
to the dataset will result in a segmentation fault. It turns out
the data is classified as compounded while it is not. Now, the
state is always reset first to not compounded followed by the
existing check if the variable is compounded.

* (fix) Removed undesired comment lines.

* (fix) Segmentation fault when using a compound type: added test.

* (fix) Added the missing cmpd_transform.c file to MANIFEST.

* (fix) cmpd_dtransform test: autotools and source header.

Added the cmp_dtransform test to the autotools configuration and
updated the HDF Group copyright header.

Co-authored-by: Jan-Willem Blokland <[email protected]>

* (fix) H5Z_xform_create function and scientific notation (#144)

* (fix) H5Z_xform_create function and scientific notation

Implemented a more sophisticated check to support scientific notation
in the expression of the H5Zset_data_transform function.

* (fix) H5Z_xform_create and scientific notation: Added test.

Added a test to demonstrate that the parsing of expression
which includes scientific notation works correctly. Improved
inline comment.

Co-authored-by: Jan-Willem Blokland <[email protected]>

* Adds const to a few global variables (#623)

* Committing clang-format changes

* Adds consts to a few global variables

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Made private my_yyinput function static (#618)

This prevents it being exported as a public symbol.

* Reduces overly-pedantic casting in the public headers (#644)

* Committing clang-format changes

* Fixes overly pedantic casting in public headers

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

* Fixes for a couple of trivial warnings (#676)

* Committing clang-format changes

* Trivial warning fixes:

* Removes an unused done target in H5Tbit.c
* Add (void) to quiet "ignored return value" warnings in the generators
  (which generally ignore errors)

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Various CMake changes (#679)

* Committing clang-format changes

* Several CMake updates:

* Removes unused HDF5_ENABLE_HSIZET
* Switches TEST_SHELL_SCRIPTS to ON
* Sets SH_PROGRAM to bash instead of sh

* Set default build type back to RelWithDebInfo

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Revert "Removes alternative function enter/leave macro scheme (#678)"

This reverts commit edddb11.

* err_compat test cleanup (#681)

* Committing clang-format changes

* Cleans up err_compat test and output

* Formatted source

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Sets the memory alloc sanity check option to disabled in autotools (#686)

* Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

This reverts commit 652ffca.

(Only for release branch).

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

Co-authored-by: jhendersonHDF <[email protected]>
Co-authored-by: Dana Robinson <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: bmribler <[email protected]>
Co-authored-by: Jan-Willem Blokland <[email protected]>
Co-authored-by: Jan-Willem Blokland <[email protected]>
Co-authored-by: Sean McBride <[email protected]>
lrknox added a commit that referenced this pull request Jul 21, 2021
…used by c++ code that fail on centos7 when -std=c++11 is not set. (#847)

* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
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    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

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    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

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    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
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    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

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        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

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        header guard underscore cleanup
        JNI cleanup

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        * Mostly all javadoc fixes, one argument rename.

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        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

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        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

     …
lrknox added a commit that referenced this pull request Jul 26, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

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    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

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    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

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    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

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    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* (fix) Segmentation fault when using a compound type. (#143)

* (fix) Segmentation fault when using a compound type.

In the case when a compounded attribute is written to dataset
followed by writing the data with a data transform function
to the dataset will result in a segmentation fault. It turns out
the data is classified as compounded while it is not. Now, the
state is always reset first to not compounded followed by the
existing check if the variable is compounded.

* (fix) Removed undesired comment lines.

* (fix) Segmentation fault when using a compound type: added test.

* (fix) Added the missing cmpd_transform.c file to MANIFEST.

* (fix) cmpd_dtransform test: autotools and source header.

Added the cmp_dtransform test to the autotools configuration and
updated the HDF Group copyright header.

Co-authored-by: Jan-Willem Blokland <[email protected]>

* (fix) H5Z_xform_create function and scientific notation (#144)

* (fix) H5Z_xform_create function and scientific notation

Implemented a more sophisticated check to support scientific notation
in the expression of the H5Zset_data_transform function.

* (fix) H5Z_xform_create and scientific notation: Added test.

Added a test to demonstrate that the parsing of expression
which includes scientific notation works correctly. Improved
inline comment.

Co-authored-by: Jan-Willem Blokland <[email protected]>

* Adds const to a few global variables (#623)

* Committing clang-format changes

* Adds consts to a few global variables

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Made private my_yyinput function static (#618)

This prevents it being exported as a public symbol.

* Reduces overly-pedantic casting in the public headers (#644)

* Committing clang-format changes

* Fixes overly pedantic casting in public headers

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

* Fixes for a couple of trivial warnings (#676)

* Committing clang-format changes

* Trivial warning fixes:

* Removes an unused done target in H5Tbit.c
* Add (void) to quiet "ignored return value" warnings in the generators
  (which generally ignore errors)

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Various CMake changes (#679)

* Committing clang-format changes

* Several CMake updates:

* Removes unused HDF5_ENABLE_HSIZET
* Switches TEST_SHELL_SCRIPTS to ON
* Sets SH_PROGRAM to bash instead of sh

* Set default build type back to RelWithDebInfo

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Revert "Removes alternative function enter/leave macro scheme (#678)"

This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

* err_compat test cleanup (#681)

* Committing clang-format changes

* Cleans up err_compat test and output

* Formatted source

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Sets the memory alloc sanity check option to disabled in autotools (#686)

* Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

(Only for release branch).

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "e…
lrknox added a commit that referenced this pull request Jul 26, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* (fix) Segmentation fault when using a compound type. (#143)

* (fix) Segmentation fault when using a compound type.

In the case when a compounded attribute is written to dataset
followed by writing the data with a data transform function
to the dataset will result in a segmentation fault. It turns out
the data is classified as compounded while it is not. Now, the
state is always reset first to not compounded followed by the
existing check if the variable is compounded.

* (fix) Removed undesired comment lines.

* (fix) Segmentation fault when using a compound type: added test.

* (fix) Added the missing cmpd_transform.c file to MANIFEST.

* (fix) cmpd_dtransform test: autotools and source header.

Added the cmp_dtransform test to the autotools configuration and
updated the HDF Group copyright header.

Co-authored-by: Jan-Willem Blokland <[email protected]>

* (fix) H5Z_xform_create function and scientific notation (#144)

* (fix) H5Z_xform_create function and scientific notation

Implemented a more sophisticated check to support scientific notation
in the expression of the H5Zset_data_transform function.

* (fix) H5Z_xform_create and scientific notation: Added test.

Added a test to demonstrate that the parsing of expression
which includes scientific notation works correctly. Improved
inline comment.

Co-authored-by: Jan-Willem Blokland <[email protected]>

* Adds const to a few global variables (#623)

* Committing clang-format changes

* Adds consts to a few global variables

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Made private my_yyinput function static (#618)

This prevents it being exported as a public symbol.

* Reduces overly-pedantic casting in the public headers (#644)

* Committing clang-format changes

* Fixes overly pedantic casting in public headers

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

* Fixes for a couple of trivial warnings (#676)

* Committing clang-format changes

* Trivial warning fixes:

* Removes an unused done target in H5Tbit.c
* Add (void) to quiet "ignored return value" warnings in the generators
  (which generally ignore errors)

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Various CMake changes (#679)

* Committing clang-format changes

* Several CMake updates:

* Removes unused HDF5_ENABLE_HSIZET
* Switches TEST_SHELL_SCRIPTS to ON
* Sets SH_PROGRAM to bash instead of sh

* Set default build type back to RelWithDebInfo

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Revert "Removes alternative function enter/leave macro scheme (#678)"

This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

* err_compat test cleanup (#681)

* Committing clang-format changes

* Cleans up err_compat test and output

* Formatted source

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Sets the memory alloc sanity check option to disabled in autotools (#686)

* Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

(Only for release branch).

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "…
@derobins derobins deleted the minor/reduce_pedantic_public_casting branch July 28, 2021 16:49
lrknox added a commit that referenced this pull request Jul 30, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

 …
lrknox added a commit that referenced this pull request Jul 31, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merg…
lrknox added a commit that referenced this pull request Aug 4, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

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    * Sets the memory alloc sanity check option to disabled in autotools (#686)

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    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

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    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

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    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

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commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

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        * Undo version 11 clang format changes

        * Merge CMake changes from develop

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        #358 patches from vtk
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        * Merge updates

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        JNI cleanup

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        * Mostly all javadoc fixes, one argument rename.

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        * Committing clang-format changes

        * minor whitespace

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        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

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    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

…
lrknox added a commit that referenced this pull request Aug 11, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
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    header guard underscore cleanup
    JNI cleanup

    * format alignment

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    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

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    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
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    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

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    * Add time struct

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    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

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    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

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    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

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    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

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commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* (fix) Segmentation fault when using a compound type. (#143)

* (fix) Segmentation fault when using a compound type.

In the case when a compounded attribute is written to dataset
followed by writing the data with a data transform function
to the dataset will result in a segmentation fault. It turns out
the data is classified as compounded while it is not. Now, the
state is always reset first to not compounded followed by the
existing check if the variable is compounded.

* (fix) Removed undesired comment lines.

* (fix) Segmentation fault when using a compound type: added test.

* (fix) Added the missing cmpd_transform.c file to MANIFEST.

* (fix) cmpd_dtransform test: autotools and source header.

Added the cmp_dtransform test to the autotools configuration and
updated the HDF Group copyright header.

Co-authored-by: Jan-Willem Blokland <[email protected]>

* (fix) H5Z_xform_create function and scientific notation (#144)

* (fix) H5Z_xform_create function and scientific notation

Implemented a more sophisticated check to support scientific notation
in the expression of the H5Zset_data_transform function.

* (fix) H5Z_xform_create and scientific notation: Added test.

Added a test to demonstrate that the parsing of expression
which includes scientific notation works correctly. Improved
inline comment.

Co-authored-by: Jan-Willem Blokland <[email protected]>

* Adds const to a few global variables (#623)

* Committing clang-format changes

* Adds consts to a few global variables

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Made private my_yyinput function static (#618)

This prevents it being exported as a public symbol.

* Reduces overly-pedantic casting in the public headers (#644)

* Committing clang-format changes

* Fixes overly pedantic casting in public headers

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

* Fixes for a couple of trivial warnings (#676)

* Committing clang-format changes

* Trivial warning fixes:

* Removes an unused done target in H5Tbit.c
* Add (void) to quiet "ignored return value" warnings in the generators
  (which generally ignore errors)

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Various CMake changes (#679)

* Committing clang-format changes

* Several CMake updates:

* Removes unused HDF5_ENABLE_HSIZET
* Switches TEST_SHELL_SCRIPTS to ON
* Sets SH_PROGRAM to bash instead of sh

* Set default build type back to RelWithDebInfo

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Revert "Removes alternative function enter/leave macro scheme (#678)"

This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

* err_compat test cleanup (#681)

* Committing clang-format changes

* Cleans up err_compat test and output

* Formatted source

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Sets the memory alloc sanity check option to disabled in autotools (#686)

* Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

(Only for release branch).

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * R…
lrknox added a commit that referenced this pull request Aug 11, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

 …
lrknox added a commit that referenced this pull request Aug 13, 2021
* Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

* Reduces overly-pedantic casting in the public headers (#644)

* Committing clang-format changes

* Fixes overly pedantic casting in public headers

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix H5FD_mpio_Debug="rw" can report MPI_count instead of bytes (#699)

* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes pre-C99 build and header cruft (#700)

* Committing clang-format changes

* Removes pre-C99 build and header cruft

* Assumes ANSI C headers exist
* Assumes stdbool.h, stdint.h, and inttypes.h are present
* Assumes the C++ compiler can handle stdint.h
* Removes all work-arounds for missing functionality, especially stdbool.h

* Formats source

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Clean up type size checks in configure.ac (#702)

* Removes some DEC Alpha cruft from H5detect and H5private.h (#708)

* Updates bin/trace script to correctly wrap H5TRACE macros near clang-format column limit (#719)

* Removes clang-format comments from H5O.c call

* Fixes bin/trace to correctly wrap lines near the clang-format limit

* Removed unused variable from bin/trace

* Adds __STDC_FORMAT_MACROS before including inttypes.h w/ C++ (#726)

* Adds __STDC_FORMAT_MACROS before including inttypes.h w/ C++

Allows C++ library to be built on older versions of gcc.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Moves H5PacketTable default ctor inside source file (#731)

* Remove private H5_GCC_DIAG_OFF/ON from standalone program (#734)

* Organize and align compiler flags (#741)

* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace

* GH #359 implement and fix tools 1.6 API usage

* remove excessive comments

* Flip inits to correct ifdef section

* rework ifdef to be simpler

* format issue

* Reformat ifdef inits

* remove static attribute

* format compliance

* Update names

* Revert because logic relies on float not being int

* Changes noticed from creating merge of #412

* Double underscore change

* Correct compiler version variable used

* Remove header guard underscores

* Whitespace cleanup

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* correct window os name

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* HDFFV-11113 long double in tools

* HDFFV-11113 add note

* Disable long double tests for now

* HDFFV-11228 remove arbitrary CMake warning groups.

* Make each flag a string

* Some Javadoc warning fixes

* Updated javadoc fixes

* # WARNING: head commit changed in the meantime

HDFFV-11229 Fix long double usage in tools and java

Changed h5dump and h5ls to just print 128-bit for long double type.
Added test and file for dataset and attributes with all three float
types.

* Committing clang-format changes

* HDFFV-11229 Add release note

* HDFFV-11229 windows testfile needed

* fix typo

* Remove non supported message text

* HDFFV-11229 - change ldouble test to check both native and general

* HDFFV-11229 add second file compare

* HDFFV-11229 fix reference file

* HDFFV-11229 autotools check two refs

* HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output

* Committing clang-format changes

* Update release note

* Update attribute type of ref file

* Change source of ninja for macs

* try port instead of brew

* Recommended is to use brew.

* Undo non long double changes

* remove unneeded file

* Fix perl and doxygen CMake code

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

* Add stamp files to BYPRODUCTS

* Only one copy of file exists

* Fix custom cmmand depends targets

* Fix fortran custom command DEPENDS

* Add LD_LIBRARY_PATH to tests

* Add custom target for DEPENDS

* Add h5detect conditionaly to generated target DEPENDS

* Correct DEPENDS targets

* Parallel builds need the mpi compiler for pkgconfig scripts.

* install only if MPI build

* Fortran target depends

* Remove incorrect source attribute

* doxygen adjustments

* doxygen build updates

* Correct version

* Correct function version - function has been merged to 1.12

* Correct version string for map functions

* Cleanup warnings for tools debug builds

* TRILAB-227 - fix indexing for h5diff selections

* Correct location of pos to index function call

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES because of AppleClang

* if blocks needed for build modes

* Update list of DT platforms

* VS2019 correctly displays float values

* revert VS2019 change

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

* Java reference functions updated

enabled fortran in cmake gcc action yaml file
java reference test changed to correctly test refs
jni reference functions that create ids changed to use jni id logging

* Correct BYPRODUCTS argument

* Correct more genereated files BYPRODUCTS

* BYPRODUCTS must have unique locations

* Fix typo

* Fix fortran configure checks

* Rework H5_PAC_C_MAX_REAL_PRECISION setting logic

* Add note about fortran configure change

* Adds a quick for for some egregious chunk_info badness (#722)

* Fixes issue with ccmake that prevents building Fortran (#723)

ccmake runs iteratively, and the check_fortran_source_runs
macros were clobbering a single output file that did not
get updated on further configure iterations

* Fix conflicts with merge

* Move MAX_PRECISION back to HDF5UseFortran.cmake

* Use STREQUAL to test macro argument

* Move C language test to ConfigureChecks from HDF5UseFortran

* MAX_PRECISION defines must be defined

* Organize flags and align autotools and cmake

* Fix comment in no-error-general warnings files.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Dana Robinson <[email protected]>

* Fixes C++ warnings when passing hsize_t values to printf in test code (#745)

* Normalization of H5_nanosleep() with VFD SWMR branch (#746)

* Normalization of H5_nanosleep() with VFD SWMR branch

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Correct missing variable declaration.

* Fixes some H5SL include statements (#758)

* Fixes non-C99 format strings in tarray test code (#766)

* Cleans up some POSIX header bits in H5private.h (#783)

* Further simplifies Autotools type size checks (#789)

Also fixes an issue where clock_gettime and difftime are not detected
due to earlier simplifications of this code.

* Normalization of CMake H5pubconf.h with Autotools (#791)

Mostly just moving things around and changing the comments to keep the
delta small. The only symbol change is that for curl/curl.h which I
changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol
is not used in the library and is just an artifact of the checks.

Co-authored-by: jhendersonHDF <[email protected]>
Co-authored-by: Dana Robinson <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Scot Breitenfeld <[email protected]>
Co-authored-by: Allen Byrne <[email protected]>
lrknox added a commit that referenced this pull request Aug 17, 2021
…used by c++ code that fail on centos7 when -std=c++11 is not set. (#847) (#913)

* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting
…
lrknox added a commit that referenced this pull request Aug 19, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

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    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Me…
lrknox added a commit that referenced this pull request Aug 20, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes
…
lrknox added a commit that referenced this pull request Aug 21, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * …
lrknox added a commit that referenced this pull request Aug 24, 2021
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe077238f10de3d6ca8f037f9a42af89
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
Author: Dana Robinson <[email protected]>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
Author: Allen Byrne <[email protected]>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
Author: Allen Byrne <[email protected]>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f35b8508db90648409ba80ee36d61c9e
Author: Allen Byrne <[email protected]>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
Author: Larry Knox <[email protected]>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>

* Squashed commit of the following:

commit e2578640fedf671cf11535cf22313dd477da1165
Author: Larry Knox <[email protected]>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f5040736868f8eec584ab5af6d2a77e4d45ae30
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec98d6cee5b4609643839a4ad2a848fb
    Author: Dana Robinson <[email protected]>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe24956f0158b3363a3fbb8a42c8e7e0f
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431c9ef5bfef6243dbc26d0005d08c49d
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f35b8508db90648409ba80ee36d61c9e
    Author: Allen Byrne <[email protected]>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac0011d3a26f660a7f4d07c40f41d63f10
    Author: Larry Knox <[email protected]>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

        Co-authored-by: jhendersonHDF <[email protected]>
        Co-authored-by: Dana Robinson <[email protected]>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <[email protected]>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <[email protected]>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b791adbdcaafed3ba718c95dd349a4e9a.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca58699388fff960c6a92c8ecfd1fc5d19b.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <[email protected]>
    Co-authored-by: Dana Robinson <[email protected]>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Jan-Willem Blokland <[email protected]>
    Co-authored-by: Sean McBride <[email protected]>

commit 14794490ec522fbd3ac2faa6efa0920979490fbc
Author: Larry Knox <[email protected]>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b50484841118cf633fd6147302a63a30fd746.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe077238f10de3d6ca8f037f9a42af89
    Author: Allen Byrne <[email protected]>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a4441e4ef43dd23708d415e5e3b84800f4
    Author: Allen Byrne <[email protected]>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang fo…
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4 participants