Remove unused packages #12
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Context
As far as I can tell, these packages are all unused. There are no references to them in the code.
Testing
run_all_manuscript_workflows.pysuccessfully. Figure 1 workflow fails because load all_baseline before subsetting #11 has not been merged intodevgenerate_main_manifest.pysuccessfully and compared output to S3 withpd.testing.assert_frame_equal.generate_perturbation_manifest.pydue to issue in Bugfix: perturbation manifest.items()#14(EDIT from Julie: see comment below/ my notes in the description on PR#15 for updated testing details)