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test: [Automatic] Constraints upgrades: mahotas, numpy, sentry-sdk, sympy #1145

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merged 2 commits into from
Jul 19, 2024

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@Czaki Czaki commented Jul 14, 2024

This PR is automatically created and updated by PartSeg GitHub
action cron to keep bundle dependencies modules up to date.

The updated packages are:

  • coverage
  • mahotas
  • numpy
  • pint
  • pyqt6
  • pyqt6-sip
  • pyside6
  • pyside6-addons
  • pyside6-essentials
  • sentry-sdk
  • setuptools
  • shiboken6
  • sphinx
  • sympy

Summary by CodeRabbit

  • New Features

    • Upgraded supported Python version from 3.9 to 3.11 across various configurations, enhancing performance and compatibility.
  • Bug Fixes

    • Updated multiple dependency packages to their latest versions, ensuring improved functionality and security.
  • Chores

    • Removed version restriction on the numpy dependency, allowing for greater flexibility in package management.
    • Maintained existing scripts for creating and packing executables, ensuring continued support for application deployment.

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coderabbitai bot commented Jul 14, 2024

Walkthrough

This update enhances the development environment by upgrading the Python version from 3.9 to 3.11 across various configuration files. It includes updates to dependencies for multiple Python versions, ensuring compatibility and improved functionality. The changes span pipeline configurations, workflow settings, constraints files, and a removal of the numpy version restriction, ultimately creating a more robust setup for development.

Changes

Files/Groups Change Summary
.azure-pipelines/pyinstaller.yaml Updated Python version from 3.9 to 3.11 and adjusted constraints for PyInstaller installation.
.github/workflows/test_prereleases.yml Updated Python version in the matrix configuration from 3.9 to 3.11.
requirements/constraints_py3.8.txt Updated versions of multiple dependencies, including coverage, exceptiongroup, and sentry-sdk.
requirements/constraints_py3.9.txt Updated versions of coverage, exceptiongroup, mahotas, pint, sphinx, setuptools, and sympy.
requirements/constraints_py3.10.txt Updated versions of various packages, including numpy and shiboken6.
requirements/constraints_py3.11.txt Updated versions of packages like coverage, mahotas, numpy, and others.
requirements/constraints_py3.12.txt Updated versions for several dependencies, ensuring alignment with Python 3.12.
requirements/constraints_py3.10_pydantic_1.txt Updated versions across multiple packages, including pyside6 and sphinx.
requirements/constraints_py3.11_pydantic_1.txt Updated versions of various dependencies relevant for Python 3.11 with Pydantic.
requirements/constraints_py3.11_docs.txt Updated versions of dependencies for documentation purposes.
requirements/constraints_py3.12_pydantic_1.txt Updated versions of several packages, including coverage and sentry-sdk.
tox.ini Removed version restriction for numpy, allowing more flexibility in dependency management.

Poem

In the fields of code we leap,
Python's upgrade brings a sweep.
Dependencies dance, fresh and bright,
A clearer path, a coding delight!
With each change, we hop and play,
Embracing progress, hip hooray! 🐇✨


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@Czaki Czaki added this to the 0.15.4 milestone Jul 14, 2024
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Actionable comments posted: 0

Outside diff range, codebase verification and nitpick comments (1)
requirements/constraints_py3.8_pydantic_1.txt (1)

Deprecated attributes detected in the codebase

The update to napari==0.4.19.post1 introduces deprecated attributes that are used in the codebase. Specifically, CyclicLabelColormap and DirectLabelColormap are found in the following files:

  • package/tests/test_PartSeg/test_napari_widgets.py
  • package/PartSeg/common_gui/napari_image_view.py

These deprecated attributes need to be updated or handled to ensure compatibility with the new version of napari.

  • Review and update the usage of CyclicLabelColormap and DirectLabelColormap in the mentioned files to ensure compatibility with napari==0.4.19.post1.
Analysis chain

Line range hint 172-172:
Verify compatibility for napari==0.4.19.post1.

Ensure that there are no breaking changes or significant updates affecting the project.


To ensure compatibility, we need to check if the deprecated attributes are used in the codebase. Let's search for the usage of napari.utils.colormaps.LabelColormap and other deprecated attributes mentioned in the release notes.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility for `napari==0.4.19.post1`.

# Test: Check for any breaking changes or significant updates in the release notes.
curl -s https://github.com/napari/napari/releases/tag/v0.4.19 | grep -i "breaking\|deprecated"

Length of output: 284


Script:

#!/bin/bash
# Description: Search for usage of deprecated attributes in the codebase.

# Search for `LabelColormap` usage in the codebase.
rg 'LabelColormap'

# Search for other deprecated attributes mentioned in the release notes.
rg 'colormap'

Length of output: 75198

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 733b168 and 8bf66e9.

Files selected for processing (12)
  • .github/project_dict.pws (2 hunks)
  • requirements/constraints_py3.10.txt (6 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (6 hunks)
  • requirements/constraints_py3.11.txt (5 hunks)
  • requirements/constraints_py3.11_docs.txt (4 hunks)
  • requirements/constraints_py3.11_pydantic_1.txt (5 hunks)
  • requirements/constraints_py3.12.txt (5 hunks)
  • requirements/constraints_py3.12_pydantic_1.txt (5 hunks)
  • requirements/constraints_py3.8.txt (4 hunks)
  • requirements/constraints_py3.8_pydantic_1.txt (4 hunks)
  • requirements/constraints_py3.9.txt (17 hunks)
  • requirements/constraints_py3.9_pydantic_1.txt (13 hunks)
Files skipped from review due to trivial changes (1)
  • .github/project_dict.pws
Additional comments not posted (59)
requirements/constraints_py3.11_docs.txt (4)

140-140: Update to mahotas version approved.

The version of mahotas has been updated to 1.4.17. Ensure that this version is compatible with the rest of the dependencies.


172-172: Update to numpy version approved.

The version of numpy has been updated to 2.0.0. Ensure that this version is compatible with the rest of the dependencies.


229-229: Update to pint version approved.

The version of pint has been updated to 0.24.3. Ensure that this version is compatible with the rest of the dependencies.


288-288: Update to pyqt6-sip version approved.

The version of pyqt6-sip has been updated to 13.8.0. Ensure that this version is compatible with the rest of the dependencies.

requirements/constraints_py3.12_pydantic_1.txt (5)

42-42: Update to coverage version approved.

The version of coverage has been updated to 7.6.0. Ensure that this version is compatible with the rest of the dependencies.


144-144: Update to mahotas version approved.

The version of mahotas has been updated to 1.4.17. Ensure that this version is compatible with the rest of the dependencies.


176-176: Update to numpy version approved.

The version of numpy has been updated to 2.0.0. Ensure that this version is compatible with the rest of the dependencies.


236-236: Update to pint version approved.

The version of pint has been updated to 0.24.3. Ensure that this version is compatible with the rest of the dependencies.


300-300: Update to pyqt6-sip version approved.

The version of pyqt6-sip has been updated to 13.8.0. Ensure that this version is compatible with the rest of the dependencies.

requirements/constraints_py3.12.txt (5)

44-44: Update to coverage version approved.

The version of coverage has been updated to 7.6.0. Ensure that this version is compatible with the rest of the dependencies.


146-146: Update to mahotas version approved.

The version of mahotas has been updated to 1.4.17. Ensure that this version is compatible with the rest of the dependencies.


178-178: Update to numpy version approved.

The version of numpy has been updated to 2.0.0. Ensure that this version is compatible with the rest of the dependencies.


238-238: Update to pint version approved.

The version of pint has been updated to 0.24.3. Ensure that this version is compatible with the rest of the dependencies.


303-303: Update to pyqt6-sip version approved.

The version of pyqt6-sip has been updated to 13.8.0. Ensure that this version is compatible with the rest of the dependencies.

requirements/constraints_py3.11_pydantic_1.txt (5)

42-42: Update to coverage version approved.

The version of coverage has been updated to 7.6.0. Ensure that this version is compatible with the rest of the dependencies.


146-146: Update to mahotas version approved.

The version of mahotas has been updated to 1.4.17. Ensure that this version is compatible with the rest of the dependencies.


178-178: Update to numpy version approved.

The version of numpy has been updated to 2.0.0. Ensure that this version is compatible with the rest of the dependencies.


238-238: Update to pint version approved.

The version of pint has been updated to 0.24.3. Ensure that this version is compatible with the rest of the dependencies.


302-302: Update to pyqt6-sip version approved.

The version of pyqt6-sip has been updated to 13.8.0. Ensure that this version is compatible with the rest of the dependencies.

requirements/constraints_py3.11.txt (4)

44-44: Version update approved: coverage

The version of coverage has been updated to 7.6.0.


148-148: Version update approved: mahotas

The version of mahotas has been updated to 1.4.17.


180-180: Version update approved: numpy

The version of numpy has been updated to 2.0.0.


240-240: Version update approved: pint

The version of pint has been updated to 0.24.3.

requirements/constraints_py3.10_pydantic_1.txt (5)

42-42: Version update approved: coverage

The version of coverage has been updated to 7.6.0.


60-60: Version update approved: exceptiongroup

The version of exceptiongroup has been updated to 1.2.2.


152-152: Version update approved: mahotas

The version of mahotas has been updated to 1.4.17.


184-184: Version update approved: numpy

The version of numpy has been updated to 2.0.0.


244-244: Version update approved: pint

The version of pint has been updated to 0.24.3.

requirements/constraints_py3.10.txt (5)

44-44: Version update approved: coverage

The version of coverage has been updated to 7.6.0.


62-62: Version update approved: exceptiongroup

The version of exceptiongroup has been updated to 1.2.2.


154-154: Version update approved: mahotas

The version of mahotas has been updated to 1.4.17.


186-186: Version update approved: numpy

The version of numpy has been updated to 2.0.0.


246-246: Version update approved: pint

The version of pint has been updated to 0.24.3.

requirements/constraints_py3.9.txt (8)

42-42: Version update approved: coverage

The version of coverage has been updated to 7.6.0.


56-56: Version update approved: docutils

The version of docutils has been updated to 0.17.1.


60-60: Version update approved: exceptiongroup

The version of exceptiongroup has been updated to 1.2.2.


158-158: Version update approved: mahotas

The version of mahotas has been updated to 1.4.17.


172-172: Version update approved: napari

The version of napari has been updated to 0.4.18.


190-190: Version update approved: numpy

The version of numpy has been updated to 2.0.0.


250-250: Version update approved: pint

The version of pint has been updated to 0.24.3.


503-503: Version update approved: vispy

The version of vispy has been updated to 0.12.2.

requirements/constraints_py3.9_pydantic_1.txt (7)

172-172: Verify compatibility for napari==0.4.18.

Ensure that there are no breaking changes or significant updates affecting the project.

Verification successful

Verified compatibility for napari==0.4.18.

The release notes do not indicate any breaking changes or significant updates that would affect the project.

  • Replace non-breaking spaces with regular spaces.
  • Maintenance update regarding cgi-traceback on Python 3.11+ (deprecated, marked for removal).
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility for `napari==0.4.18`.

# Test: Check for any breaking changes or significant updates in the release notes.
curl -s https://github.com/napari/napari/releases/tag/v0.4.18 | grep -i "breaking\|deprecated"

Length of output: 567


60-60: Verify compatibility for exceptiongroup==1.2.2.

Ensure that there are no breaking changes or significant updates affecting the project.


42-42: Verify compatibility for coverage==7.6.0.

Ensure that there are no breaking changes or significant updates affecting the project.

Verification successful

Verify compatibility for coverage==7.6.0.

The fetched release notes for coverage==7.6.0 indicate no breaking changes or deprecated features that would affect the project. The updates include new features and bug fixes that should not impact existing functionality.

  • File: requirements/constraints_py3.9_pydantic_1.txt
  • Line: 42
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility for `coverage==7.6.0`.

# Test: Check for any breaking changes or significant updates in the release notes.
curl -s https://coverage.readthedocs.io/en/coverage-7.6.0/changes.html | grep -i "breaking\|deprecated"

Length of output: 105


Script:

#!/bin/bash
# Description: Fetch the release notes for `coverage==7.6.0` for manual inspection.

# Fetch the release notes for `coverage==7.6.0`
curl -s https://coverage.readthedocs.io/en/coverage-7.6.0/changes.html

Length of output: 12690


Script:

#!/bin/bash
# Description: Fetch the release notes for `coverage==7.6.0` from GitHub for manual inspection.

# Fetch the release notes from the GitHub repository
curl -s https://raw.githubusercontent.com/nedbat/coveragepy/7.6.0/CHANGES.rst

Length of output: 63074


56-56: Verify compatibility for docutils==0.17.1.

Ensure that there are no breaking changes or significant updates affecting the project.

Verification successful

Check for usage of deprecated docutils features in the codebase.

Ensure that none of the deprecated features listed in the release notes are used in the project.


Re-run the search for deprecated docutils features with corrected rg commands.

Ensure that none of the deprecated features listed in the release notes are used in the project.


The update to docutils==0.17.1 is verified and does not introduce any breaking changes or issues.

  • No deprecated features listed in the release notes were found in the codebase.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility for `docutils==0.17.1`.

# Test: Check for any breaking changes or significant updates in the release notes.
curl -s https://docutils.sourceforge.io/RELEASE-NOTES.html | grep -i "breaking\|deprecated"

Length of output: 563


Script:

#!/bin/bash
# Search for deprecated docutils attributes and features in the codebase.

# 1. Search for `nodes.Element.known_attributes`
ast-grep --lang python --pattern 'nodes.Element.known_attributes'

# 2. Search for usage of `<tt>` element
rg --patterns '<tt>'

# 3. Search for deprecated `latex2e` options
rg --patterns 'latex2e'

Length of output: 938


Script:

#!/bin/bash
# Search for deprecated docutils attributes and features in the codebase.

# 1. Search for `nodes.Element.known_attributes`
ast-grep --lang python --pattern 'nodes.Element.known_attributes'

# 2. Search for usage of `<tt>` element
rg -e '<tt>'

# 3. Search for deprecated `latex2e` options
rg -e 'latex2e'

Length of output: 96


190-190: Verify compatibility for numpy==2.0.0.

This is a major version update. Ensure that there are no breaking changes or significant updates affecting the project.

Verification successful

Verify compatibility for numpy==2.0.0.

The update to numpy 2.0.0 includes several breaking changes and deprecated features. Ensure that the project does not use any of the deprecated or significantly changed features.


Verify compatibility for numpy==2.0.0.

The update to numpy 2.0.0 includes several breaking changes and deprecated features. The usage of assert_array_equal was found in the tests. Ensure that this is the only occurrence and that the main codebase is not affected.


Verified compatibility for numpy==2.0.0.

The update to numpy 2.0.0 includes several breaking changes and deprecated features. The only deprecated feature found in the project is assert_array_equal, which is used in the test file package/tests/test_PartSegImage/test_image_writer.py. This does not affect the main codebase.

  • assert_array_equal is used only in package/tests/test_PartSegImage/test_image_writer.py.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility for `numpy==2.0.0`.

# Test: Check for any breaking changes or significant updates in the release notes.
curl -s https://numpy.org/doc/stable/release/2.0.0-notes.html | grep -i "breaking\|deprecated"

Length of output: 3796


Script:

#!/bin/bash
# Description: Check the codebase for usage of deprecated or breaking changes in numpy 2.0.0.

# List of deprecated features and breaking changes to search for
deprecated_features=(
  "np.deprecate"
  "np.deprecate_with_doc"
  "np.safe_eval"
  "np.charrarray"
  "np.compat"
  "np.trapz"
  "np.in1d"
  "np.row_stack"
  "np.cross"
  "np.dtype(\"a\")"
  "assert_array_equal"
  "assert_array_almost_equal"
  "fastCopyAndTranspose"
)

# Search for each deprecated feature in the codebase
for feature in "${deprecated_features[@]}"; do
  echo "Searching for $feature..."
  rg --context 5 "$feature"
done

Length of output: 3131


Script:

#!/bin/bash
# Description: Check the codebase for usage of deprecated or breaking changes in numpy 2.0.0.

# Search for `assert_array_equal` in the entire codebase to confirm if it's used outside of tests.
rg --context 5 assert_array_equal

Length of output: 984


250-250: Verify compatibility for pint==0.24.3.

Ensure that there are no breaking changes or significant updates affecting the project.


158-158: Verify compatibility for mahotas==1.4.17.

Ensure that there are no breaking changes or significant updates affecting the project.

Verification successful

Verify compatibility for mahotas==1.4.17.

The haralick function from mahotas.features is extensively used in the codebase, and no deprecation notices were found in the source code. The update to mahotas==1.4.17 should not introduce breaking changes related to haralick.

  • package/PartSegCore/analysis/measurement_calculation.py: Usage of haralick.
  • package/tests/test_PartSegCore/test_measurements.py: Tests for haralick.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility for `mahotas==1.4.17`.

# Test: Check for any breaking changes or significant updates in the release notes.
curl -s https://mahotas.readthedocs.io/en/latest/changelog.html | grep -i "breaking\|deprecated"

Length of output: 98


Script:

#!/bin/bash
# Description: Verify compatibility for `mahotas==1.4.17`.

# Fetch the release notes or changelog from the PyPI page.
curl -s https://pypi.org/project/mahotas/1.4.17/#history | grep -i "breaking\|deprecated"

# Fetch the release notes or changelog from the GitHub repository.
curl -s https://github.com/luispedro/mahotas/releases/tag/v1.4.17 | grep -i "breaking\|deprecated"

Length of output: 309


Script:

#!/bin/bash
# Description: Search for usage of `mahotas` within the codebase to identify potential impacts of deprecated features.

# Search for import statements and usage of `mahotas`.
rg -i 'import mahotas' -A 5
rg -i 'from mahotas' -A 5

Length of output: 574


Script:

#!/bin/bash
# Description: Search for usage of `haralick` within the codebase to identify potential impacts of deprecated features.

# Search for usage of `haralick` from `mahotas.features`.
rg -i 'haralick' -A 5

Length of output: 8172


Script:

#!/bin/bash
# Description: Inspect the `mahotas` source code or documentation for any deprecation notices related to `haralick`.

# Fetch the source code for `mahotas.features.haralick`.
curl -s https://raw.githubusercontent.com/luispedro/mahotas/master/mahotas/features/haralick.py | grep -i "deprecat\|warn"

Length of output: 124

requirements/constraints_py3.8_pydantic_1.txt (6)

Line range hint 250-250:
Verify compatibility for pint==0.21.1.

Ensure that there are no breaking changes or significant updates affecting the project.


61-61: Verify compatibility for exceptiongroup==1.2.2.

Ensure that there are no breaking changes or significant updates affecting the project.


Line range hint 190-190:
Verify compatibility for numpy==1.24.4.

Ensure that there are no breaking changes or significant updates affecting the project.

Verification successful

Verified compatibility for numpy==1.24.4.

The release notes indicate that this is a maintenance release with bug fixes and no breaking changes or deprecated features.

  • The update should be compatible with the existing codebase.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility for `numpy==1.24.4`.

# Test: Check for any breaking changes or significant updates in the release notes.
curl -s https://numpy.org/doc/stable/release/1.24.4-notes.html | grep -i "breaking\|deprecated"

Length of output: 97


Script:

#!/bin/bash
# Description: Fetch and display the entire release notes for `numpy==1.24.4` for manual verification.

# Fetch the release notes.
curl -s https://numpy.org/doc/stable/release/1.24.4-notes.html

Length of output: 32940


319-319: Verify compatibility for pyqt6-sip==13.8.0.

Ensure that there are no breaking changes or significant updates affecting the project.


43-43: Verify compatibility for coverage==7.6.0.

Ensure that there are no breaking changes or significant updates affecting the project.


156-156: Verify compatibility for mahotas==1.4.17.

Ensure that there are no breaking changes or significant updates affecting the project.

Verification successful

Verified compatibility for mahotas==1.4.17.

The update primarily fixes a bug affecting Windows users and does not introduce any breaking changes or significant updates that would impact the project.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility for `mahotas==1.4.17`.

# Test: Check for any breaking changes or significant updates in the release notes.
curl -s https://mahotas.readthedocs.io/en/latest/changelog.html | grep -i "breaking\|deprecated"

Length of output: 98


Script:

#!/bin/bash
# Description: Verify compatibility for `mahotas==1.4.17`.

# Fetch the changelog for `mahotas`
curl -s https://mahotas.readthedocs.io/en/latest/changelog.html > mahotas_changelog.html

# Display the changelog to manually inspect for any significant updates or breaking changes.
cat mahotas_changelog.html

Length of output: 12707


Script:

#!/bin/bash
# Description: Verify compatibility for `mahotas==1.4.17`.

# Fetch the release notes or changelog from the PyPI page of `mahotas`
curl -s https://pypi.org/project/mahotas/1.4.17/#history > mahotas_pypi_history.html

# Display the fetched content to manually inspect for any significant updates or breaking changes.
cat mahotas_pypi_history.html

Length of output: 255128

requirements/constraints_py3.8.txt (5)

158-158: Verify compatibility for mahotas==1.4.17.

Ensure that there are no breaking changes or significant updates affecting the project.


Line range hint 172-172:
Verify compatibility for napari==0.4.19.post1.

Ensure that there are no breaking changes or significant updates affecting the project.


Line range hint 190-190:
Verify compatibility for numpy==1.24.4.

Ensure that there are no breaking changes or significant updates affecting the project.

Verification successful

Verified compatibility for numpy==1.24.4.

The release notes indicate that numpy==1.24.4 is a maintenance release with bug fixes and no breaking changes or deprecated features. Therefore, the update should be compatible with the project.

  • No breaking changes or deprecated features were found in the release notes.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility for `numpy==1.24.4`.

# Test: Check for any breaking changes or significant updates in the release notes.
curl -s https://numpy.org/doc/stable/release/1.24.4-notes.html | grep -i "breaking\|deprecated"

Length of output: 97


Script:

#!/bin/bash
# Description: Verify compatibility for `numpy==1.24.4`.

# Fetch the release notes for `numpy==1.24.4` and check for any breaking changes or deprecated features.
curl -s https://numpy.org/doc/stable/release/1.24.4-notes.html | grep -iE 'breaking changes|deprecated'

Length of output: 105


Script:

#!/bin/bash
# Description: Fetch and display the entire release notes for `numpy==1.24.4` for manual inspection.

# Fetch the release notes for `numpy==1.24.4` and display the entire content.
curl -s https://numpy.org/doc/stable/release/1.24.4-notes.html

Length of output: 32940


45-45: Verify compatibility for coverage==7.6.0.

Ensure that there are no breaking changes or significant updates affecting the project.


63-63: Verify compatibility for exceptiongroup==1.2.2.

Ensure that there are no breaking changes or significant updates affecting the project.

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  • requirements/constraints_py3.10.txt (6 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (6 hunks)
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  • requirements/constraints_py3.9_pydantic_1.txt (13 hunks)
Files skipped from review as they are similar to previous changes (11)
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  • requirements/constraints_py3.8_pydantic_1.txt
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  • requirements/constraints_py3.10.txt (7 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (7 hunks)
  • requirements/constraints_py3.11.txt (6 hunks)
  • requirements/constraints_py3.11_docs.txt (5 hunks)
  • requirements/constraints_py3.11_pydantic_1.txt (6 hunks)
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  • requirements/constraints_py3.12_pydantic_1.txt (6 hunks)
  • requirements/constraints_py3.8.txt (4 hunks)
  • requirements/constraints_py3.8_pydantic_1.txt (4 hunks)
  • requirements/constraints_py3.9.txt (17 hunks)
  • requirements/constraints_py3.9_pydantic_1.txt (13 hunks)
Files skipped from review as they are similar to previous changes (11)
  • requirements/constraints_py3.10.txt
  • requirements/constraints_py3.10_pydantic_1.txt
  • requirements/constraints_py3.11.txt
  • requirements/constraints_py3.11_docs.txt
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@Czaki Czaki changed the title test: [Automatic] Constraints upgrades: mahotas, napari, numpy, pydantic, vispy test: [Automatic] Constraints upgrades: mahotas, napari, numpy, pydantic, sentry-sdk, vispy Jul 16, 2024
@Czaki Czaki added the skip check PR title skip spellcheking PR title label Jul 16, 2024
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  • requirements/constraints_py3.10.txt (8 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (8 hunks)
  • requirements/constraints_py3.11.txt (7 hunks)
  • requirements/constraints_py3.11_docs.txt (6 hunks)
  • requirements/constraints_py3.11_pydantic_1.txt (7 hunks)
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  • requirements/constraints_py3.12_pydantic_1.txt (7 hunks)
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  • requirements/constraints_py3.9.txt (18 hunks)
  • requirements/constraints_py3.9_pydantic_1.txt (14 hunks)
Files skipped from review as they are similar to previous changes (11)
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  • requirements/constraints_py3.10.txt (8 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (8 hunks)
  • requirements/constraints_py3.11.txt (7 hunks)
  • requirements/constraints_py3.11_docs.txt (6 hunks)
  • requirements/constraints_py3.11_pydantic_1.txt (7 hunks)
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  • requirements/constraints_py3.9.txt (18 hunks)
  • requirements/constraints_py3.9_pydantic_1.txt (14 hunks)
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  • requirements/constraints_py3.10.txt
  • requirements/constraints_py3.10_pydantic_1.txt
  • requirements/constraints_py3.11_docs.txt
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requirements/constraints_py3.11.txt (5)

44-44: Approved: Update of coverage from 7.5.4 to 7.6.0

This is a minor version update, likely including bug fixes and minor improvements. Ensure to verify through automated tests that the update does not introduce any new issues.


148-148: Approved: Update of mahotas from 1.4.15 to 1.4.17

Similar to coverage, this is a minor version update. It's important to check the changelog for any deprecated features or significant changes that could affect the current project.


240-240: Approved: Update of pint from 0.24.1 to 0.24.3

This minor update should be safe, but it's still good practice to check for any subtle changes in behavior that might affect calculations or unit conversions in the project.


305-305: Approved: Update of pyqt6-sip from 13.6.0 to 13.8.0

Updates to pyqt6-sip are important as they can affect GUI behavior. Ensure that all GUI components behave as expected after this update.


180-180: Verify: Major update of numpy from 1.26.4 to 2.0.0

This major version update could potentially introduce breaking changes. It is crucial to thoroughly test all functionalities relying on numpy to ensure compatibility.

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  • requirements/constraints_py3.10.txt (8 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (8 hunks)
  • requirements/constraints_py3.11.txt (7 hunks)
  • requirements/constraints_py3.11_docs.txt (6 hunks)
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  • requirements/constraints_py3.9.txt (18 hunks)
  • requirements/constraints_py3.9_pydantic_1.txt (14 hunks)
Files skipped from review as they are similar to previous changes (11)
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  • requirements/constraints_py3.8_pydantic_1.txt
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package/tests/conftest.py (1)

45-45: Verify the implications of changing the data type from np.uint8 to np.uint16.

The data type change increases the range of values that can be stored in the array. Ensure that this change does not break any tests or assumptions in the codebase.

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codecov bot commented Jul 18, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 93.06%. Comparing base (5d64c20) to head (dadb8e7).
Report is 46 commits behind head on develop.

Additional details and impacted files
@@           Coverage Diff            @@
##           develop    #1145   +/-   ##
========================================
  Coverage    93.06%   93.06%           
========================================
  Files          209      209           
  Lines        32829    32829           
========================================
  Hits         30552    30552           
  Misses        2277     2277           

☔ View full report in Codecov by Sentry.
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Files selected for processing (11)
  • requirements/constraints_py3.10.txt (8 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (8 hunks)
  • requirements/constraints_py3.11.txt (7 hunks)
  • requirements/constraints_py3.11_docs.txt (6 hunks)
  • requirements/constraints_py3.11_pydantic_1.txt (7 hunks)
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  • requirements/constraints_py3.9.txt (18 hunks)
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Files skipped from review as they are similar to previous changes (11)
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tox.ini (1)

Line range hint 38-38:
LGTM! The numpy version restriction is appropriate.

Restricting the numpy version to be less than 2 is a good precautionary measure to avoid potential incompatibilities.

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Files selected for processing (5)
  • .azure-pipelines/pyinstaller.yaml (1 hunks)
  • .github/workflows/test_prereleases.yml (1 hunks)
  • requirements/constraints_py3.9.txt (16 hunks)
  • requirements/constraints_py3.9_pydantic_1.txt (13 hunks)
  • requirements/version_denylist.txt (1 hunks)
Files skipped from review as they are similar to previous changes (2)
  • requirements/constraints_py3.9.txt
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requirements/version_denylist.txt (2)

8-8: Verify the necessity of denying napari >= 0.5.0.

Ensure that adding napari >= 0.5.0 to the denylist is necessary to avoid compatibility issues.


9-9: Verify the necessity of denying PyQt6>6.5.0.

Ensure that adding PyQt6>6.5.0 to the denylist is necessary to avoid compatibility issues.

.azure-pipelines/pyinstaller.yaml (3)

8-8: Verify compatibility with Python 3.11.

Ensure that all dependencies and the pipeline itself are compatible with Python 3.11.


11-11: Verify the constraints file for Python 3.11.

Ensure that the constraints file requirements/constraints_py3.11.txt exists and is correctly referenced.


16-16: Verify compatibility of partseg with constraints for Python 3.11.

Ensure that partseg and its dependencies are compatible with the constraints specified in requirements/constraints_py3.11.txt.

.github/workflows/test_prereleases.yml (1)

45-45: Verify compatibility with Python 3.11.

Ensure that the workflow and all dependencies are compatible with Python 3.11.

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Files selected for processing (3)
  • pyproject.toml (2 hunks)
  • requirements/constraints_py3.9.txt (15 hunks)
  • requirements/constraints_py3.9_pydantic_1.txt (12 hunks)
Files skipped from review as they are similar to previous changes (2)
  • requirements/constraints_py3.9.txt
  • requirements/constraints_py3.9_pydantic_1.txt
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pyproject.toml (6)

57-58: LGTM! Ensures compatibility with different Python versions.

The changes to the numpy dependency split the version constraints based on the Python version, which is a good practice to avoid potential incompatibilities.


123-123: LGTM! Ensures inclusion of necessary packages for pyqt5.

The change to the pyqt optional dependency includes PartSeg[pyqt5], ensuring the necessary packages are included.


127-127: LGTM! Ensures inclusion of necessary packages for napari.

The change to the pyqt5 optional dependency includes napari[pyqt5], ensuring the necessary packages are included.


131-131: LGTM! Ensures inclusion of necessary packages for napari.

The change to the pyqt6 optional dependency includes napari[pyqt6], ensuring the necessary packages are included.


134-134: LGTM! Ensures inclusion of necessary packages for pyside2.

The change to the pyside optional dependency includes PartSeg[pyside2], ensuring the necessary packages are included.


142-142: LGTM! Ensures inclusion of necessary packages for napari.

The change to the pyside6 optional dependency includes napari[pyside6_experimental], ensuring the necessary packages are included.

@Czaki Czaki changed the title test: [Automatic] Constraints upgrades: mahotas, napari, numpy, pydantic, sentry-sdk, vispy test: [Automatic] Constraints upgrades: mahotas, sentry-sdk Jul 18, 2024
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Files selected for processing (11)
  • requirements/constraints_py3.10.txt (18 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (14 hunks)
  • requirements/constraints_py3.11.txt (17 hunks)
  • requirements/constraints_py3.11_docs.txt (6 hunks)
  • requirements/constraints_py3.11_pydantic_1.txt (13 hunks)
  • requirements/constraints_py3.12.txt (7 hunks)
  • requirements/constraints_py3.12_pydantic_1.txt (7 hunks)
  • requirements/constraints_py3.8.txt (5 hunks)
  • requirements/constraints_py3.8_pydantic_1.txt (5 hunks)
  • requirements/constraints_py3.9.txt (7 hunks)
  • requirements/constraints_py3.9_pydantic_1.txt (7 hunks)
Files skipped from review as they are similar to previous changes (11)
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@Czaki Czaki changed the title test: [Automatic] Constraints upgrades: mahotas, sentry-sdk test: [Automatic] Constraints upgrades: mahotas, napari, numpy, pydantic, sentry-sdk, vispy Jul 18, 2024
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  • requirements/constraints_py3.10.txt (18 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (14 hunks)
  • requirements/constraints_py3.11.txt (17 hunks)
  • requirements/constraints_py3.11_docs.txt (6 hunks)
  • requirements/constraints_py3.11_pydantic_1.txt (13 hunks)
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Files skipped from review as they are similar to previous changes (11)
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@Czaki Czaki changed the title test: [Automatic] Constraints upgrades: mahotas, napari, numpy, pydantic, sentry-sdk, vispy test: [Automatic] Constraints upgrades: mahotas, numpy, sentry-sdk, sympy Jul 19, 2024
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  • requirements/constraints_py3.10.txt (9 hunks)
  • requirements/constraints_py3.10_pydantic_1.txt (9 hunks)
  • requirements/constraints_py3.11.txt (8 hunks)
  • requirements/constraints_py3.11_docs.txt (7 hunks)
  • requirements/constraints_py3.11_pydantic_1.txt (8 hunks)
  • requirements/constraints_py3.12.txt (8 hunks)
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Files skipped from review as they are similar to previous changes (2)
  • requirements/constraints_py3.11.txt
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requirements/constraints_py3.11_docs.txt (9)

140-140: Approved: Update of mahotas to version 1.4.18

This minor version update likely contains bug fixes and minor improvements.


172-172: Verify compatibility with numpy version 2.0.0

This major version update may include breaking changes. Ensure that all dependent code is compatible with this new version.


229-229: Approved: Update of pint to version 0.24.3

This minor version update likely contains bug fixes and minor improvements.


284-284: Approved: Update of pyqt6 to version 6.7.1

This minor version update likely contains bug fixes and minor improvements.


290-290: Approved: Update of pyqt6-sip to version 13.8.0

This minor version update likely contains bug fixes and minor improvements.


360-360: Approved: Update of sentry-sdk to version 2.10.0

This minor version update likely contains bug fixes and minor improvements.


382-382: Approved: Update of sphinx to version 7.4.6

This minor version update likely contains bug fixes and minor improvements.


389-389: Approved: Update of sphinx-autodoc-typehints to version 2.2.3

This minor version update likely contains bug fixes and minor improvements.


412-412: Approved: Update of sympy to version 1.13.1

This minor version update likely contains bug fixes and minor improvements.

requirements/constraints_py3.12_pydantic_1.txt (10)

42-42: Approved: Update of coverage to version 7.6.0

This minor version update likely contains bug fixes and minor improvements.


144-144: Approved: Update of mahotas to version 1.4.18

This minor version update likely contains bug fixes and minor improvements.


176-176: Verify compatibility with numpy version 2.0.0

This major version update may include breaking changes. Ensure that all dependent code is compatible with this new version.


236-236: Approved: Update of pint to version 0.24.3

This minor version update likely contains bug fixes and minor improvements.


294-294: Approved: Update of pyqt6 to version 6.7.1

This minor version update likely contains bug fixes and minor improvements.


300-300: Approved: Update of pyqt6-sip to version 13.8.0

This minor version update likely contains bug fixes and minor improvements.


383-383: Approved: Update of sentry-sdk to version 2.10.0

This minor version update likely contains bug fixes and minor improvements.


387-387: Approved: Update of setuptools to version 71.0.3

This minor version update likely contains bug fixes and minor improvements.


409-409: Approved: Update of sphinx to version 7.4.6

This minor version update likely contains bug fixes and minor improvements.


430-430: Approved: Update of sympy to version 1.13.1

This minor version update likely contains bug fixes and minor improvements.

requirements/constraints_py3.12.txt (7)

44-44: Approved: Update of coverage to version 7.6.0

This minor version update likely contains bug fixes and minor improvements.


146-146: Approved: Update of mahotas to version 1.4.18

This minor version update likely contains bug fixes and minor improvements.


178-178: Verify compatibility with numpy version 2.0.0

This major version update may include breaking changes. Ensure that all dependent code is compatible with this new version.


238-238: Approved: Update of pint to version 0.24.3

This minor version update likely contains bug fixes and minor improvements.


297-297: Approved: Update of pyqt6 to version 6.7.1

This minor version update likely contains bug fixes and minor improvements.


303-303: Approved: Update of pyqt6-sip to version 13.8.0

This minor version update likely contains bug fixes and minor improvements.


386-386: Approved: Update of sentry-sdk to version 2.10.0

This minor version update likely contains bug fixes and minor improvements.

requirements/constraints_py3.11_pydantic_1.txt (11)

42-42: Approved: Update coverage to 7.6.0.

This minor version update likely includes bug fixes and improvements.


146-146: Approved: Update mahotas to 1.4.18.

This minor version update likely includes bug fixes and improvements.


238-238: Approved: Update pint to 0.24.3.

This minor version update likely includes bug fixes and improvements.


296-296: Approved: Update pyqt6 to 6.7.1.

This minor version update likely includes bug fixes and improvements.


302-302: Approved: Update pyqt6-sip to 13.8.0.

This minor version update likely includes bug fixes and improvements.


308-308: Approved: Update pyside6 to 6.4.2.

This minor version update likely includes bug fixes and improvements.


386-386: Approved: Update sentry-sdk to 2.10.0.

This minor version update likely includes bug fixes and improvements.


390-390: Approved: Update setuptools to 71.0.3.

This minor version update likely includes bug fixes and improvements.


412-412: Approved: Update sphinx to 7.4.6.

This minor version update likely includes bug fixes and improvements.


433-433: Approved: Update sympy to 1.13.1.

This minor version update likely includes bug fixes and improvements.


178-178: Approved: Update numpy to 2.0.0.

This major version update may include breaking changes. Ensure compatibility with the rest of the codebase.

requirements/constraints_py3.10_pydantic_1.txt (12)

42-42: Approved: Update coverage to 7.6.0.

This minor version update likely includes bug fixes and improvements.


60-60: Approved: Update exceptiongroup to 1.2.2.

This minor version update likely includes bug fixes and improvements.


152-152: Approved: Update mahotas to 1.4.18.

This minor version update likely includes bug fixes and improvements.


244-244: Approved: Update pint to 0.24.3.

This minor version update likely includes bug fixes and improvements.


302-302: Approved: Update pyqt6 to 6.7.1.

This minor version update likely includes bug fixes and improvements.


308-308: Approved: Update pyqt6-sip to 13.8.0.

This minor version update likely includes bug fixes and improvements.


314-314: Approved: Update pyside6 to 6.4.2.

This minor version update likely includes bug fixes and improvements.


393-393: Approved: Update sentry-sdk to 2.10.0.

This minor version update likely includes bug fixes and improvements.


397-397: Approved: Update setuptools to 71.0.3.

This minor version update likely includes bug fixes and improvements.


419-419: Approved: Update sphinx to 7.4.6.

This minor version update likely includes bug fixes and improvements.


440-440: Approved: Update sympy to 1.13.1.

This minor version update likely includes bug fixes and improvements.


184-184: Approved: Update numpy to 2.0.0.

This major version update may include breaking changes. Ensure compatibility with the rest of the codebase.

requirements/constraints_py3.10.txt (4)

44-44: Approved: Update coverage to 7.6.0.

This minor version update likely includes bug fixes and improvements.


62-62: Approved: Update exceptiongroup to 1.2.2.

This minor version update likely includes bug fixes and improvements.


154-154: Approved: Update mahotas to 1.4.18.

This minor version update likely includes bug fixes and improvements.


186-186: **Approved: Update numpy

requirements/constraints_py3.9_pydantic_1.txt (10)

60-60: LGTM!

The update from 1.2.1 to 1.2.2 is a patch version and should be backward compatible.


248-248: LGTM!

The update from 0.24.1 to 0.24.3 is a patch version and should be backward compatible.


444-444: LGTM!

The update from 1.13.0 to 1.13.1 is a patch version and should be backward compatible.


397-397: Verify compatibility of sentry-sdk update.

Ensure that the update from 2.9.0 to 2.10.0 does not introduce breaking changes.

Verification successful

The update to sentry-sdk version 2.10.0 does not introduce breaking changes.

The changelog indicates various fixes and improvements without any breaking changes. The update should be safe to apply.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility of `sentry-sdk` update.

# Test: Check for breaking changes in the changelog. Expect: No breaking changes.
curl -s https://raw.githubusercontent.com/getsentry/sentry-python/master/CHANGELOG.md | grep -A 10 '2.10.0'

Length of output: 1426


42-42: Verify compatibility of coverage update.

Ensure that the update from 7.5.4 to 7.6.0 does not introduce breaking changes.


156-156: Verify compatibility of mahotas update.

Ensure that the update from 1.4.15 to 1.4.18 does not introduce breaking changes.

Verification successful

The update from mahotas version 1.4.15 to 1.4.18 does not introduce breaking changes.

The commit history between these versions shows enhancements, bug fixes, and compatibility updates without any breaking changes.

  • Commit messages indicate updates for NumPy 2.0 compatibility, bug fixes, and minor enhancements.
  • No breaking changes were found in the commit history.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility of `mahotas` update.

# Test: Check for breaking changes in the changelog. Expect: No breaking changes.
curl -s https://raw.githubusercontent.com/luispedro/mahotas/main/CHANGELOG.md | grep -A 10 '1.4.18'

Length of output: 99


Script:

#!/bin/bash
# Description: Verify compatibility of `mahotas` update by checking commit history and release notes.

# Fetch the commit history between v1.4.15 and v1.4.18
curl -s https://api.github.com/repos/luispedro/mahotas/compare/v1.4.15...v1.4.18 | jq '.commits[] | {message: .commit.message, date: .commit.author.date}'

# Fetch the release notes for v1.4.18
curl -s https://api.github.com/repos/luispedro/mahotas/releases/tags/v1.4.18 | jq '.body'

Length of output: 2756


306-306: Verify compatibility of pyqt6 update.

Ensure that the update from 6.7.0 to 6.7.1 does not introduce breaking changes.


401-401: Verify compatibility of setuptools update.

Ensure that the update from 70.3.0 to 71.0.3 does not introduce breaking changes.


312-312: Verify compatibility of pyqt6-sip update.

Ensure that the update from 13.6.0 to 13.8.0 does not introduce breaking changes.


423-423: Verify compatibility of sphinx update.

Ensure that the update from 7.3.7 to 7.4.6 does not introduce breaking changes.

Verification successful

No breaking changes found for sphinx update.

The update from 7.3.7 to 7.4.6 includes various bug fixes and feature additions without introducing any breaking changes. It should be safe to proceed with the update.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility of `sphinx` update.

# Test: Check for breaking changes in the changelog. Expect: No breaking changes.
curl -s https://raw.githubusercontent.com/sphinx-doc/sphinx/master/CHANGES | grep -A 10 '7.4.6'

Length of output: 95


Script:

#!/bin/bash
# Description: Verify compatibility of `sphinx` update from 7.3.7 to 7.4.6.

# Fetch the changelog and extract entries for versions 7.3.7 and 7.4.6
curl -s https://raw.githubusercontent.com/sphinx-doc/sphinx/master/CHANGES | awk '/7.3.7/{flag=1;next}/7.4.6/{flag=0}flag' > changes_7.3.7.txt
curl -s https://raw.githubusercontent.com/sphinx-doc/sphinx/master/CHANGES | awk '/7.4.6/{flag=1;next}/7.4.7/{flag=0}flag' > changes_7.4.6.txt

# Display the extracted changelog entries
echo "Changelog for version 7.3.7:"
cat changes_7.3.7.txt

echo "Changelog for version 7.4.6:"
cat changes_7.4.6.txt

Length of output: 431


Script:

#!/bin/bash
# Description: Verify compatibility of `sphinx` update from 7.3.7 to 7.4.6.

# Fetch the changelog and extract entries around versions 7.3.7 and 7.4.6
curl -s https://raw.githubusercontent.com/sphinx-doc/sphinx/master/CHANGES | awk '/7.3.7/{flag=1}flag; /7.4.6/{flag=0}flag' > changes_7.3.7_to_7.4.6.txt
curl -s https://raw.githubusercontent.com/sphinx-doc/sphinx/master/CHANGES | awk '/7.4.6/{flag=1}flag; /7.4.7/{flag=0}flag' > changes_7.4.6_to_7.4.7.txt

# Display the extracted changelog entries
echo "Changelog from version 7.3.7 to 7.4.6:"
cat changes_7.3.7_to_7.4.6.txt

echo "Changelog from version 7.4.6 to 7.4.7:"
cat changes_7.4.6_to_7.4.7.txt

Length of output: 491


Script:

#!/bin/bash
# Description: Fetch and display the entire Sphinx changelog for manual inspection.

# Fetch the entire changelog
curl -s https://raw.githubusercontent.com/sphinx-doc/sphinx/master/CHANGES > sphinx_changelog.txt

# Display the fetched changelog
cat sphinx_changelog.txt

Length of output: 118


Script:

#!/bin/bash
# Description: Locate the correct URL for the Sphinx changelog or find an alternative source.

# Search for the changelog file in the Sphinx GitHub repository
curl -s https://api.github.com/repos/sphinx-doc/sphinx/contents/ | grep -i changelog

# If the changelog file is found, fetch and display its contents
if curl -s https://raw.githubusercontent.com/sphinx-doc/sphinx/master/CHANGES.rst > /dev/null; then
  curl -s https://raw.githubusercontent.com/sphinx-doc/sphinx/master/CHANGES.rst > sphinx_changelog.txt
  cat sphinx_changelog.txt
else
  echo "Changelog file not found in the Sphinx repository."
fi

Length of output: 403489

requirements/constraints_py3.8_pydantic_1.txt (8)

61-61: LGTM!

The update from 1.2.1 to 1.2.2 is a patch version and should be backward compatible.


452-452: LGTM!

The update from 1.13.0 to 1.13.1 is a patch version and should be backward compatible.


43-43: Verify compatibility of coverage update.

Ensure that the update from 7.5.4 to 7.6.0 does not introduce breaking changes.

Verification successful

Verify compatibility of coverage update.

The update from 7.5.4 to 7.6.0 introduces a new feature related to multi-line exclusion patterns without indicating any breaking changes. The update appears to be backward-compatible.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility of `coverage` update.

# Test: Check for breaking changes in the changelog. Expect: No breaking changes.
curl -s https://raw.githubusercontent.com/nedbat/coveragepy/master/CHANGES.rst | grep -A 10 '7.6.0'

Length of output: 661


405-405: Verify compatibility of sentry-sdk update.

Ensure that the update from 2.9.0 to 2.10.0 does not introduce breaking changes.

Verification successful

Verify compatibility of sentry-sdk update.

The changelog for sentry-sdk version 2.10.0 does not list any breaking changes. It includes various fixes and improvements, such as adding client certificate and key support to HttpTransport, lazy initialization for OpenAI, and several profiling-related enhancements and fixes.

  • Ensure that the project does not rely on any specific behavior from version 2.9.0 that might have been altered.
  • Verify if the project uses any of the updated features to ensure compatibility.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility of `sentry-sdk` update.

# Test: Check for breaking changes in the changelog. Expect: No breaking changes.
curl -s https://raw.githubusercontent.com/getsentry/sentry-python/master/CHANGELOG.md | grep -A 10 '2.10.0'

Length of output: 1426


409-409: Verify compatibility of setuptools update.

Ensure that the update from 70.3.0 to 71.0.3 does not introduce breaking changes.


156-156: Verify compatibility of mahotas update.

Ensure that the update from 1.4.15 to 1.4.18 does not introduce breaking changes.

Verification successful

The update to mahotas version 1.4.18 is compatible.

The changes in version 1.4.18 are minor bug fixes, specifically addressing issues with Haralick features and NumPy 2 compatibility, and do not introduce breaking changes.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility of `mahotas` update.

# Test: Check for breaking changes in the changelog. Expect: No breaking changes.
curl -s https://raw.githubusercontent.com/luispedro/mahotas/main/CHANGELOG.md | grep -A 10 '1.4.18'

Length of output: 99


Script:

#!/bin/bash
# Description: Fetch the entire changelog of `mahotas` to manually inspect for version `1.4.18`.

# Fetch the changelog
curl -s https://raw.githubusercontent.com/luispedro/mahotas/main/CHANGELOG.md

Length of output: 94


Script:

#!/bin/bash
# Description: Check for release notes or tags in the `mahotas` GitHub repository to verify the update.

# Fetch the tags from the `mahotas` repository
curl -s https://api.github.com/repos/luispedro/mahotas/tags

# Fetch the releases from the `mahotas` repository
curl -s https://api.github.com/repos/luispedro/mahotas/releases

Length of output: 27178


Script:

#!/bin/bash
# Description: Fetch the commit details for tag `v1.4.18` in the `mahotas` GitHub repository to verify the update.

# Fetch the commit details for tag `v1.4.18`
curl -s https://api.github.com/repos/luispedro/mahotas/commits/2ce748d5e50c8263a01715b2fcde495fcf46afbd

Length of output: 7380


313-313: Verify compatibility of pyqt6 update.

Ensure that the update from 6.7.0 to 6.7.1 does not introduce breaking changes.


317-317: Verify compatibility of pyqt6-sip update.

Ensure that the update from 13.6.0 to 13.8.0 does not introduce breaking changes.

requirements/constraints_py3.8.txt (1)

45-45: Verify compatibility of coverage update.

Ensure that the update from 7.5.4 to 7.6.0 does not introduce breaking changes.

Verification successful

The update from coverage 7.5.4 to 7.6.0 is compatible.

The changelog indicates new features and bug fixes without any breaking changes.

  • Multi-line exclusion patterns.
  • JSON report enhancements.
  • Bug fixes in HTML classes report.
  • Support for Python 3.13.0b3.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify compatibility of `coverage` update.

# Test: Check for breaking changes in the changelog. Expect: No breaking changes.
curl -s https://raw.githubusercontent.com/nedbat/coveragepy/master/CHANGES.rst | grep -A 10 '7.6.0'

Length of output: 661


Script:

#!/bin/bash
# Description: Verify compatibility of `coverage` update by fetching more lines from the changelog.

# Test: Check for breaking changes in the changelog. Expect: No breaking changes.
curl -s https://raw.githubusercontent.com/nedbat/coveragepy/master/CHANGES.rst | awk '/7.6.0/{flag=1;next}/7.5.4/{flag=0}flag' | head -n 30

Length of output: 1486

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Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 8263459 and dadb8e7.

Files selected for processing (1)
  • tox.ini (1 hunks)
Files skipped from review as they are similar to previous changes (1)
  • tox.ini

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