Chore: Merge cli and cli_commands

[iLLiCiTiT]

Changelog Description

Removed cli_commands.py and moved the content to cli.py.

Additional info

Content of cli_commands.py did shrunk to import of function and calling the function, which can happen in cli.py directly without need to maintaining 2 files.

Create new function for cli publish in ayon_core/pipeline/publish/lib.py which does what Commands publish function did.

Testing notes:

All commands should be working as before.

1. Make sure that publish command is working as expected, it is used on farm (e.g. deadline publish).

[BigRoy]

Had to create the addon and upload it to avoid this error, from recent PR #793

2024-07-25 16:12:17:  0: STDOUT: Traceback (most recent call last):
2024-07-25 16:12:17:  0: STDOUT:   File "E:\dev\ayon-core\client\ayon_core\cli.py", line 331, in main
2024-07-25 16:12:17:  0: STDOUT:     main_cli(
2024-07-25 16:12:17:  0: STDOUT:   File "C:\Users\User\AppData\Local\Ynput\AYON\dependency_packages\ayon_2406251801_windows.zip\runtime\click\core.py", line 1157, in __call__
2024-07-25 16:12:17:  0: STDOUT:     return self.main(*args, **kwargs)
2024-07-25 16:12:17:  0: STDOUT:   File "C:\Users\User\AppData\Local\Ynput\AYON\dependency_packages\ayon_2406251801_windows.zip\runtime\click\core.py", line 1078, in main
2024-07-25 16:12:17:  0: STDOUT:     rv = self.invoke(ctx)
2024-07-25 16:12:17:  0: STDOUT:   File "C:\Users\User\AppData\Local\Ynput\AYON\dependency_packages\ayon_2406251801_windows.zip\runtime\click\core.py", line 1688, in invoke
2024-07-25 16:12:17:  0: STDOUT:     return _process_result(sub_ctx.command.invoke(sub_ctx))
2024-07-25 16:12:17:  0: STDOUT:   File "C:\Users\User\AppData\Local\Ynput\AYON\dependency_packages\ayon_2406251801_windows.zip\runtime\click\core.py", line 1688, in invoke
2024-07-25 16:12:17:  0: STDOUT:     return _process_result(sub_ctx.command.invoke(sub_ctx))
2024-07-25 16:12:17:  0: STDOUT:   File "C:\Users\User\AppData\Local\Ynput\AYON\dependency_packages\ayon_2406251801_windows.zip\runtime\click\core.py", line 1688, in invoke
2024-07-25 16:12:17:  0: STDOUT:     return _process_result(sub_ctx.command.invoke(sub_ctx))
2024-07-25 16:12:17:  0: STDOUT:   File "C:\Users\User\AppData\Local\Ynput\AYON\dependency_packages\ayon_2406251801_windows.zip\runtime\click\core.py", line 1434, in invoke
2024-07-25 16:12:17:  0: STDOUT:     return ctx.invoke(self.callback, **ctx.params)
2024-07-25 16:12:17:  0: STDOUT:   File "C:\Users\User\AppData\Local\Ynput\AYON\dependency_packages\ayon_2406251801_windows.zip\runtime\click\core.py", line 783, in invoke
2024-07-25 16:12:17:  0: STDOUT:     return __callback(*args, **kwargs)
2024-07-25 16:12:17:  0: STDOUT:   File "E:\dev\ayon-applications\client\ayon_applications\addon.py", line 298, in _cli_extract_environments
2024-07-25 16:12:17:  0: STDOUT:     env = self.get_farm_publish_environment_variables(
2024-07-25 16:12:17:  0: STDOUT:   File "E:\dev\ayon-applications\client\ayon_applications\addon.py", line 89, in get_farm_publish_environment_variables
2024-07-25 16:12:17:  0: STDOUT:     return self.get_app_environments_for_context(
2024-07-25 16:12:17:  0: STDOUT:   File "E:\dev\ayon-applications\client\ayon_applications\addon.py", line 52, in get_app_environments_for_context
2024-07-25 16:12:17:  0: STDOUT:     return get_app_environments_for_context(
2024-07-25 16:12:17:  0: STDOUT:   File "E:\dev\ayon-applications\client\ayon_applications\utils.py", line 187, in get_app_environments_for_context
2024-07-25 16:12:17:  0: STDOUT:     context.run_prelaunch_hooks()
2024-07-25 16:12:17:  0: STDOUT:   File "E:\dev\ayon-applications\client\ayon_applications\manager.py", line 581, in run_prelaunch_hooks
2024-07-25 16:12:17:  0: STDOUT:     prelaunch_hook.execute()
2024-07-25 16:12:17:  0: STDOUT:   File "E:\dev\ayon-core\client\ayon_core\hooks\pre_filter_farm_environments.py", line 26, in execute
2024-07-25 16:12:17:  0: STDOUT:     project_settings["core"]["filter_env_profiles"])
2024-07-25 16:12:17:  0: STDOUT: KeyError: 'filter_env_profiles'

After that submission to deadline from fusion plus deadline render + publish worked.