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Added -u to require initialised variables. #390

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Dec 7, 2016
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1 change: 1 addition & 0 deletions .travis/before_install.sh
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
#!/bin/bash

set -e -x
# set -u fails cause npm install to fail

sudo apt-get update -qq

2 changes: 1 addition & 1 deletion .travis/before_install_mysql57.sh
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
#!/bin/bash

set -e -x
set -e -u -x

sudo apt-key add ./.travis/mysql_pubkey.asc # Import public key for MySQL
sudo apt-get remove --purge "^mysql.*"
4 changes: 3 additions & 1 deletion .travis/install.sh
Original file line number Diff line number Diff line change
@@ -8,11 +8,12 @@
# iRODS setup added by Iain Bancarz (ib5), adapted from baton:
# https://github.com/wtsi-npg/baton

set -e -x
set -e -u -x

# The default build branch for all repositories. This defaults to
# TRAVIS_BRANCH unless set in the Travis build environment.
WTSI_NPG_BUILD_BRANCH=${WTSI_NPG_BUILD_BRANCH:=$TRAVIS_BRANCH}
IRODS_RIP_DIR=${IRODS_RIP_DIR:+$IRODS_RIP_DIR}

sudo apt-get install libgd2-xpm-dev # For npg_tracking
sudo apt-get install liblzma-dev # For npg_qc
@@ -58,6 +59,7 @@ fi
sudo ldconfig

# WTSI NPG Perl repo dependencies
repos=""
for repo in perl-dnap-utilities ml_warehouse npg_tracking npg_seq_common perl-irods-wrap; do
cd /tmp
# Always clone master when using depth 1 to get current tag
2 changes: 1 addition & 1 deletion .travis/script.sh
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
#!/bin/bash

set -e -x
set -e -u -x

unset PERL5LIB