Code

Release to master#55

Code

Merged

nerdstrike merged 52 commits intomasterwtsi-npg/npg_porch:masterfrom develwtsi-npg/npg_porch:develCopy head branch name to clipboardOct 16, 2023

+1,079-394

Commits

Commits on Mar 8, 2022

• Token-based authorization.

  Show description for 7cf101d
  mgcam

  committed
  7cf101d

Commits on Mar 9, 2022

• correct name for the test file

  mgcam

  committed
  ce17035

• Bug fix: need left join to link tokens to pipelines

  mgcam

  committed
  60aa467

• Provide clue when testing mode not enabled

  nerdstrike

  committed
  ced9197

• Remove spurious test mark

  nerdstrike

  committed
  5adeeba

• Document some settings for production use

  nerdstrike

  committed
  1192809

• Improve regexp for the token string.

  Show description for 6230a85
  mgcam

  committed
  6230a85

• Use custom exception for token validation

  mgcam

  committed
  93dea5e

• Exception declaration and propagation

  mgcam

  committed
  908c868

• Copyright notices added/fixed

  mgcam

  committed
  24b40ad

Commits on Mar 10, 2022

• Token auth for request to create a pipeline.

  Show description for d314852
  mgcam

  committed
  d314852

• Merge pull request #33 from mgcam/auth4pipelines

  Show description for 45fa130
  nerdstrike

  authored
  45fa130

• Merge pull request #34 from nerdstrike/quality_of_life

  Show description for e2c00c7
  mgcam

  authored
  e2c00c7

Commits on Mar 11, 2022

• Copyright notices added/fixed

  mgcam

  committed
  36f7271

• Simple token auth for task endpoints

  mgcam

  committed
  ad032b9

• Pipeline-aware token auth for task endpoints

  mgcam

  committed
  1d75aed

Commits on Mar 14, 2022

• Fix typo

  mgcam

  committed
  18a69b7

• Simplified class definitions for custom exceptions.

  mgcam

  committed
  4f36cb6

• Merge pull request #35 from mgcam/token_auth4task_endpoints

  Show description for cfca748
  nerdstrike

  authored
  cfca748

Commits on Mar 23, 2022

• Update the user guide to describe token use.

  nerdstrike

  committed
  03e0da1

• Addendum about proxies

  nerdstrike

  committed
  10e518f

• Mask some tool baggage

  nerdstrike

  committed
  75e1b15

• Big refactor to make package install and be testable in develop and regular modes

  nerdstrike

  committed
  97f05d6

• Make scripts and server correctly use postgres schema

  nerdstrike

  committed
  253de7d

• Prevent tests from receiving postgres driver options

  nerdstrike

  committed
  5282e51

Commits on Mar 24, 2022

• Make user guide refer to https wherever possible

  nerdstrike

  committed
  59453b6

• Merge pull request #36 from nerdstrike/token_admin

  Show description for fb82a89
  mgcam

  authored
  fb82a89

Commits on Apr 8, 2022

• Complete get_tasks coverage and allow filtering by pipeline name and task status

  nerdstrike

  committed
  9f4b71b

Commits on Apr 9, 2022

• Merge pull request #42 from nerdstrike/filtered_tasks

  Show description for 0e6384e
  mgcam

  authored
  0e6384e

Commits on Dec 13, 2022

• Newer starlette releases require httpx, and redirect handling has changed

  nerdstrike

  committed
  90dc184

Commits on Dec 16, 2022

• Merge pull request #46 from wtsi-npg/fix_starlette_dependency

  Show description for 8661051
  mgcam

  authored
  8661051

• Move from checkout@v2 to @V3

  kjsanger

  authored
  cfab67a

• Merge pull request #47 from wtsi-npg/kjsanger-patch-2

  Show description for 23cdb35
  jmtcsngr

  authored
  23cdb35

Commits on Aug 15, 2023

• Prevent sqlalchemy 2, pydantic 2 from installing

  nerdstrike

  committed
  6b36e5c

• Merge branch 'devel' into stabilize_deps

  nerdstrike

  committed
  f93107d

• Merge pull request #49 from nerdstrike/stabilize_deps

  Show description for 2016f5d
  nerdstrike

  authored
  2016f5d

• Switch to pyproject file for package setup

  nerdstrike

  committed
  dc38619

Commits on Aug 22, 2023

• Use setup.cfg to find modules, remove redundant setup.py

  nerdstrike

  committed
  36a996a

• Annoying httpx dependency absence

  nerdstrike

  committed
  c4ee822

• Push to python 3.10

  nerdstrike

  committed
  497acdd

• Merge pull request #48 from nerdstrike/update_packaging

  Show description for 34b39ae
  mgcam

  authored
  34b39ae

• Compatibility upgrade to use sqlachemy 2

  nerdstrike

  committed
  010b0c0

Commits on Aug 24, 2023

• Adjust pydantic use until tests pass.

  nerdstrike

  committed
  f870e48

• Satisfy pydantic deprecation warnings

  nerdstrike

  committed
  9c3e56d

Commits on Aug 25, 2023

• Merge pull request #50 from nerdstrike/sqlalchemy_upgrade

  Show description for fe491c5
  mgcam

  authored
  fe491c5

• Merge pull request #51 from nerdstrike/upgrade_pydantic

  Show description for aae9ee3
  mgcam

  authored
  aae9ee3

Commits on Oct 11, 2023

• Use best/better practices for type hints and pydantic constraints.

  nerdstrike

  committed
  7432a8e

• Merge pull request #52 from nerdstrike/pydantic_second_pass

  Show description for 3bae5f3
  mgcam

  authored
  3bae5f3

Commits on Oct 12, 2023

• Try to prevent dormant DB connection from causing 500 errors for the client.

  nerdstrike

  committed
  3a0b662

• Merge pull request #53 from nerdstrike/db_reconnect

  Show description for f96876d
  mgcam

  authored
  f96876d

Commits on Oct 16, 2023

• Version update

  nerdstrike

  committed
  80ca8fc

• Merge pull request #54 from nerdstrike/devel

  Show description for bd9f0f0
  nerdstrike

  authored
  bd9f0f0