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VEP #450

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laraPPr opened this issue Oct 25, 2024 · 1 comment · May be fixed by easybuilders/easybuild-easyconfigs#21801
Open
9 tasks

VEP #450

laraPPr opened this issue Oct 25, 2024 · 1 comment · May be fixed by easybuilders/easybuild-easyconfigs#21801
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@PetrKralCZ
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difficulty: easy software that should be easy to support easyconfig Easyconfig is available priority: medium site:ugent Software installation request for UGent Tier-2 update

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@laraPPr
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laraPPr commented Oct 25, 2024

  • link to support ticket: #2024102560000545
  • website: https://www.ensembl.org/info/docs/tools/vep
  • installation docs: https://github.com/Ensembl/ensembl-vep
  • toolchain: GCC/12.3.0 or newer
  • easyblock to use: VEP
  • required dependencies:
    • Perl
    • Perl-bundle-CPAN?
    • Archive-Zip
    • DBD-mysql
    • BioPerl
    • Bio-DB-HTS
    • # VEP requires Compress::Raw::Zlib >= 2.103?
    • Compress-Raw-Zlib
  • optional dependencies:
    • ...
  • notes:
    • ...
  • effort: (TBD)
  • other install methods
    • conda: yes (link?) / no
    • container image: yes (link?) / no
    • pre-built binaries (RHEL8 Linux x86_64): yes (link?) / no
    • easyconfig outside EasyBuild: yes / no
@laraPPr laraPPr added difficulty: easy software that should be easy to support priority: medium update site:ugent Software installation request for UGent Tier-2 easyconfig Easyconfig is available labels Oct 25, 2024
@PetrKralCZ PetrKralCZ self-assigned this Nov 5, 2024
PetrKralCZ added a commit that referenced this issue Nov 5, 2024
@PetrKralCZ
progress on #450 VEP
04f3384
PetrKralCZ added a commit that referenced this issue Nov 5, 2024
@PetrKralCZ
progress on #450 VEP
e3d7db1
PetrKralCZ added a commit that referenced this issue Nov 7, 2024
@PetrKralCZ
progress on #450 VEP
bf946d0
@PetrKralCZ
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@PetrKralCZ PetrKralCZ linked a pull request Nov 7, 2024 that will close this issue
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difficulty: easy software that should be easy to support easyconfig Easyconfig is available priority: medium site:ugent Software installation request for UGent Tier-2 update
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