progress on #450 VEP

vscentrum · Nov 7, 2024 · bf946d0 · bf946d0
1 parent 619f031
commit bf946d0
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Showing 3 changed files with 32 additions and 37 deletions.
diff --git a/450_VEP/DBD-mysql-4.050-GCC-12.3.0.eb b/450_VEP/DBD-mysql-4.050-GCC-12.3.0.eb
@@ -0,0 +1,30 @@
+easyblock = 'PerlModule'
+
+name = 'DBD-mysql'
+version = '4.050'
+
+homepage = 'https://metacpan.org/pod/distribution/DBD-mysql/lib/DBD/mysql.pm'
+description = "Perl binding for MySQL"
+
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+
+source_urls = ['https://cpan.metacpan.org/authors/id/D/DV/DVEEDEN']
+sources = [SOURCE_TAR_GZ]
+checksums = ['4f48541ff15a0a7405f76adc10f81627c33996fbf56c95c26c094444c0928d78']
+
+dependencies = [
+    ('Perl', '5.36.1'),
+    ('Perl-bundle-CPAN', '5.36.1'),
+    ('MariaDB', '11.6.0'),
+    ('zlib', '1.2.13'),
+    ('OpenSSL', '1.1', '', SYSTEM),
+]
+
+options = {'modulename': 'DBD::mysql'}
+
+sanity_check_paths = {
+    'files': ['lib/perl5/site_perl/%%(perlver)s/%s-linux-thread-multi/DBD/mysql.pm' % ARCH],
+    'dirs': ['lib/perl5/site_perl/%%(perlver)s/%s-linux-thread-multi/DBD/mysql' % ARCH],
+}
+
+moduleclass = 'data'
diff --git a/450_VEP/DBD-mysql-5.009-GCC-12.3.0.eb b/450_VEP/DBD-mysql-5.009-GCC-12.3.0.eb
diff --git a/450_VEP/VEP-113.0-GCC-12.3.0.eb b/450_VEP/VEP-113.0-GCC-12.3.0.eb
@@ -15,9 +15,9 @@ sources = ['%(version)s.tar.gz']
 checksums = ['5bb9aa8098d36c75076204693e13ef38b43c57dfce3d7d0169d119a5b4f87164']
 
 dependencies = [
-    ('Perl', '5.36.0'),
+    ('Perl', '5.36.1'),
     ('Archive-Zip', '1.68'),
-    ('DBD-mysql', '4.050'),  # TODO
+    ('DBD-mysql', '4.050'),
     ('BioPerl', '1.7.8'),
     ('Bio-DB-HTS', '3.01'),
     # VEP requires Compress::Raw::Zlib >= 2.103