v3.5.2

Patch Changes

• Fix tooltips in segmentations without locations in spatial layer (@vitessce/spatial) (#1982)

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v3.5.1

Patch Changes

• Added support to map channelNames to channelIndices provided via SpatialTargetC (@vitessce/spatial-beta) (#1971)

• Export usePageModeView from main vitessce package. (@vitessce/all) (#1986)

• Add Spatial Atlas example config. (@vitessce/example-configs) (#1985)

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• Docs
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v3.5.0

Minor Changes

• Add NaN percentage to legend (@vitessce/legend, @vitessce/scatterplot-embedding, @vitessce/scatterplot-gating, @vitessce/heatmap, @vitessce/spatial, @vitessce/vit-s) (#1947)

Patch Changes

• Fix obs index within AnnData-Zarr test fixture. (@vitessce/zarr) (#1948)

• Fix scatterplot point layer z-index bug. (@vitessce/scatterplot) (#1967)

• Correct x-axis label in CellSetSizesPlot (@vitessce/statistical-plots) (#1949)

• Add biomarker-select view. Update pageMode functionality. Register default async function plugins, allow them to use queryClient. Add types related to knowledge. (@vitessce/biomarker-select, @vitessce/constants-internal, @vitessce/example-configs, @vitessce/config, @vitessce/types, @vitessce/vit-s) (#1889)

• Fix tooltips in spatialBeta polygon segmentation (@vitessce/spatial-beta) (#1966)

• Update citation info. (docs) (#1959)

• Try removing dynamic import polyfill via a webpack ignore comment. (@vitessce/zarr) (#1960)

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v3.4.14

Patch Changes

• Support parquet-based spatialdata shapes for obsSpots. Incremental update to spatialdata file options schema. (@vitessce/zarr, @vitessce/schemas, @vitessce/types) (#1849)

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v3.4.12

Patch Changes

• Add more exports that are required for accessing multi-level coordination from python-defined plugin views. (@vitessce/all) (#1942)

• Fix incorrect obsSets.spatialdata.zarr file definition schema. Add featureLabelsType coordination type. (@vitessce/constants-internal, @vitessce/schemas) (#1938)

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• Docs
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v3.4.11

Patch Changes

• Update showcase page of docs. (docs) (#1939)

• Add obsSets to tooltip for Segmetations (@vitessce/spatial-beta) (#1936)

• Added help text overlay for the views (@vitessce/scatterplot-embedding, @vitessce/scatterplot-gating, @vitessce/statistical-plots, @vitessce/genomic-profiles, @vitessce/layer-controller, @vitessce/obs-sets-manager, @vitessce/feature-list, @vitessce/description, @vitessce/constants-internal, @vitessce/heatmap, @vitessce/spatial, @vitessce/status, @vitessce/vit-s) (#1911)

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v3.4.10

Patch Changes

• Support anndata-as-h5ad via Zarr reference specs. (@vitessce/constants-internal, @vitessce/zarr-utils, @vitessce/schemas) (#1811)

• Fixes the svg length error for legends in dev environment due to missing props (@vitessce/scatterplot-embedding, @vitessce/heatmap, @vitessce/spatial) (#1925)

• Implement sequence transformation for OME-NGFF / SpatialData. (@vitessce/spatial-utils) (#1900)

• Increase timeout for CCF test due to long loading time for CCF web component. (vitessce) (#1931)

• Fixes type for the constants (@vitessce/constants, vitessce, @vitessce/dev) (#1914)

• Support for markdown (rich text) in the description view (@vitessce/description, @vitessce/constants-internal, @vitessce/example-configs) (#1924)

• Bump higlass version to fix css issue. (@vitessce/genomic-profiles) (#1930)

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v3.4.9

Patch Changes

• Fix issue in versioned URLs. (vitessce) (#1917)

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• Docs
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v3.4.8

Patch Changes

• Add configs for paper figures. (@vitessce/statistical-plots, @vitessce/sets-utils, @vitessce/example-configs) (#1915)

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v3.4.7

Patch Changes

• Update GH actions. (vitessce) (#1913)

• Add sampleSets and sampleEdges data types, with file types for CSV and AnnData, respectively. (@vitessce/constants-internal, @vitessce/zarr, @vitessce/csv, @vitessce/schemas) (#1793)

• Switch from using TypeScript v5.5 via nightly release to the official release (vitessce) (#1902)

• Add support for pageMode prop on Vitessce and VitS components. (@vitessce/vit-s) (#1885)

• Add support for plugin async functions. (@vitessce/constants-internal, @vitessce/plugins, @vitessce/vit-s) (#1887)

• Use PNPM v9.5 and the catalog: feature. (vitessce) (#1907)

• Updated GH actions to deploy to S3. Updated old S3 urls to use vitessce.io subdomains. (vitessce) (#1910)

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• Docs
• Demo