v3.3.8

Patch Changes

• Redirect to beta-xr.vitessce.io (docs) (#1825)

• Add webpack plugin for docusaurus site to support importing from @zarrita/storage. (docs) (#1819)

v3.3.7

Patch Changes

• Add support for Zarr ZipFileStores for AnnData file types. (@vitessce/constants-internal, @vitessce/zarr-utils, @vitessce/zarr) (#1810)

• Add sampleSets and sampleEdges data types, with file types for CSV and AnnData, respectively. (@vitessce/constants-internal, @vitessce/zarr, @vitessce/csv, @vitessce/schemas) (#1791)

• Support featureLabels data type in spatialBeta legend. Add Maynard 2021 Visium example config. (@vitessce/spatial-beta, @vitessce/constants-internal, @vitessce/example-configs, @vitessce/legend, @vitessce/vit-s) (#1815)

v3.3.6

Patch Changes

• Make light theme un-selected color lighter. (@vitessce/utils) (#1814)

• Export useCoordination from main vitessce package. Implement remountOnUidChange prop. (@vitessce/all, @vitessce/vit-s) (#1812)

v3.3.5

Patch Changes

• Update light2 theme styles to use border rather than grid background. (@vitessce/vit-s, docs) (#1809)

• Add 'light2' theme in which views have a white background. (@vitessce/layer-controller-beta, @vitessce/genomic-profiles, @vitessce/spatial-utils, @vitessce/utils, @vitessce/vit-s, @vitessce/vega, @vitessce/gl, demo) (#1800)

• Do not rely on a higlass server to load chromosome sizes. (@vitessce/genomic-profiles) (#1797)

• Implement violin plot via D3 (rather than Vega-Lite). (@vitessce/statistical-plots) (#1440)

• Add Salcher et al., Cancer Cell 2022 demo config. (@vitessce/example-configs) (#1807)

• Add Lake et al. 2023 config. Fix y-axis min for violin plot. (@vitessce/statistical-plots, @vitessce/example-configs) (#1790)

• Support loading AnnData.obs columns as an obsFeatureMatrix data type. (@vitessce/statistical-plots, @vitessce/zarr, @vitessce/schemas) (#1806)

• Use built-in Object.fromEntries. (@vitessce/spatial-utils, @vitessce/utils, @vitessce/schemas, @vitessce/config, @vitessce/vit-s, @vitessce/gl) (#1808)

v3.3.4

Patch Changes

• Fix circular dependencies between @vitessce/utils and @vitessce/sets-utils. (@vitessce/utils, @vitessce/sets-utils) (#1787)

v3.3.3

Patch Changes

• Prevent URLs from being included in download dropdown for Zarr file types. (@vitessce/spatial, @vitessce/zarr, @vitessce/vit-s) (#1759)

• SpatialData file type. (@vitessce/schemas) (#1728)

• Support bitmask segmentations with gaps and irregular orderings. Enable usage of JSON-based Zarr stores in demos for tests. (@vitessce/layer-controller-beta, @vitessce/spatial-beta, @vitessce/ome-tiff, @vitessce/spatial-utils, @vitessce/constants-internal, @vitessce/image-utils, @vitessce/utils, @vitessce/json, @vitessce/zarr, @vitessce/csv, @vitessce/all, @vitessce/example-configs, @vitessce/schemas, @vitessce/config, @vitessce/vit-s, @vitessce/gl) (#1758)

• Fix volume control text sizing bug in layerController. (@vitessce/layer-controller) (#1746)

v3.3.2

Patch Changes

• Add the prop closeButtonVisible to all views, passed down to TitleInfo, to allow hiding the close buttons on each view by setting this prop in the config. (@vitessce/vit-s) (#1740)

• Memoize button icons in TitleInfo to prevent unnecessary re-renders" (@vitessce/vit-s) (#1736)

• Added a prop to hide download buttons and dropdowns. (@vitessce/vit-s) (#1743)

v3.3.1

Patch Changes

• Update Deck.gl to 8.8.27 and Luma.gl to 8.5.21 (@vitessce/layer-controller-beta, @vitessce/spatial-beta, @vitessce/gl, demo, docs, html) (#1724)

v3.3.0

Minor Changes

• Use Zarrita.js rather than ZarrJS to load Zarr data. (This change is needed to support Zarr features that are required for SpatialData but are not available in ZarrJS.) (@vitessce/spatial-utils, @vitessce/zarr-utils, @vitessce/json, @vitessce/zarr, @vitessce/gl) (#1693)

Patch Changes

• Types-only package. (@vitessce/types) (#1708)

• TypeScript types for @vitessce/utils sub-package. (@vitessce/utils) (#1706)

• Upgrade cypress to fix cypress-io/cypress#27804. (demo, html) (#1703)

• Convert @vitessce/constants-internal to TypeScript by changing file extensions. (@vitessce/constants-internal) (#1701)

v3.2.2

Patch Changes

• Implement a workaround to allow for plugin zod schemas to be used. (@vitessce/schemas) (#1696)

• Upgrade Viv to get snapping scale bar. (@vitessce/spatial-beta, @vitessce/spatial, @vitessce/image-utils, @vitessce/gl) (#1691)

• Generate alt text based on existing view-types in config, add this to the VitessceGrid. (@vitessce/vit-s) (#1695)