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build(deps): bump hpo from 0.8.1 to 0.11.0 #209

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@dependabot dependabot bot commented on behalf of github Sep 9, 2024

Bumps hpo from 0.8.1 to 0.11.0.

Changelog

Sourced from hpo's changelog.

[0.11.0]

Refactor

  • [breaking] Add Builder to build Ontology. This removes several methods from Ontology.
  • Remove aquamarine dependency, update docs

[0.10.1]

Refactor

  • Add some missing methods for Orpha diseases

[0.10.0]

Feature

  • Add Orphante diseases (OrphaDisease) to Ontology
  • Filter gene and disease annotations in subontology based on association with phenotypes
  • Add binary version 3
  • Add new example ontology

Documentation

  • Change orders of methods in Ontology to clean up the documentation.

Refactor

  • Improve the OBO parser with better error handling
  • [breaking] Add Disease trait that is needed to work with OmimDisease and OrphaDisease
  • Update example ontology
  • Update unit- and doctests to align with updated example ontology

[0.9.1] - 2024-03-30

Bugfix

  • Fix the name of the BMA SimilarityCombiner.

[0.9.0] - 2024-03-27

Feature

  • Genes by default contain only direct HpoTerm associations, not transitive inherited ones.
  • Ontology::as_graohviz method to generate graphviz data

... (truncated)

Commits
  • 24acdb2 Bump to 0.11.0
  • d0d89f6 Merge pull request #65 from anergictcell/refactor/remove-aquamarine
  • 31f466f Update documentation
  • 4badb4b Remove aquamarine dependency
  • d8a855c Updated Diagrams text file
  • c526b08 Add text file that contains Diagrams needed for documentation
  • e325dc2 Fix embarrasing bug in graphviz test
  • ba57531 Remove methods to modifiy genes or diseases within Ontology
  • 15495c4 Add Builder struct to build the Ontology
  • f698a9e Add first draft of Ontology-Builder
  • Additional commits viewable in compare view

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@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Sep 9, 2024
@github-actions github-actions bot enabled auto-merge (squash) September 9, 2024 23:57
Bumps [hpo](https://github.com/anergictcell/hpo) from 0.8.1 to 0.11.0.
- [Changelog](https://github.com/anergictcell/hpo/blob/main/CHANGELOG.md)
- [Commits](anergictcell/hpo@v0.8.1...v0.11.0)

---
updated-dependencies:
- dependency-name: hpo
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/cargo/hpo-0.11.0 branch from cdef2ee to f47c4b5 Compare September 16, 2024 23:25
@holtgrewe holtgrewe closed this Nov 20, 2024
auto-merge was automatically disabled November 20, 2024 12:20

Pull request was closed

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dependabot bot commented on behalf of github Nov 20, 2024

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.

@dependabot dependabot bot deleted the dependabot/cargo/hpo-0.11.0 branch November 20, 2024 12:20
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