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build(deps): bump hpo from 0.8.1 to 0.10.1 #187

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@dependabot dependabot bot commented on behalf of github Jul 22, 2024

Bumps hpo from 0.8.1 to 0.10.1.

Changelog

Sourced from hpo's changelog.

[0.10.1]

Refactor

  • Add some missing methods for Orpha diseases

[0.10.0]

Feature

  • Add Orphante diseases (OrphaDisease) to Ontology
  • Filter gene and disease annotations in subontology based on association with phenotypes
  • Add binary version 3
  • Add new example ontology

Documentation

  • Change orders of methods in Ontology to clean up the documentation.

Refactor

  • Improve the OBO parser with better error handling
  • [breaking] Add Disease trait that is needed to work with OmimDisease and OrphaDisease
  • Update example ontology
  • Update unit- and doctests to align with updated example ontology

[0.9.1] - 2024-03-30

Bugfix

  • Fix the name of the BMA SimilarityCombiner.

[0.9.0] - 2024-03-27

Feature

  • Genes by default contain only direct HpoTerm associations, not transitive inherited ones.
  • Ontology::as_graohviz method to generate graphviz data

[0.8.3] - 2024-03-24

Feature

  • Add method to search for OmimDisease

Bugfix

... (truncated)

Commits
  • f751516 Patch version bump to 0.10.1
  • 844f333 Add some missing Orpha functionality
  • 88d16d0 Merge pull request #62 from anergictcell/release/0.10.0
  • e1b193e Fixed merge request coming from parser refactoring on multiple branches
  • 9619a32 Merge branch 'main' into release/0.10.0
  • d831c08 Merge pull request #61 from anergictcell/feature/orphanet
  • 8df1093 Add gene-similarity example
  • 6ae1a83 Fix clipy suggestions
  • b704db8 Fix linkage unit tests with better similarity cases
  • 0534571 Fix broken links in docs
  • Additional commits viewable in compare view

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@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Jul 22, 2024
@github-actions github-actions bot enabled auto-merge (squash) July 22, 2024 23:05
@dependabot dependabot bot force-pushed the dependabot/cargo/hpo-0.10.1 branch from a6c47c1 to d87056c Compare July 22, 2024 23:10
@dependabot dependabot bot force-pushed the dependabot/cargo/hpo-0.10.1 branch 2 times, most recently from 23ebf0d to dd3d74d Compare August 5, 2024 23:29
@dependabot dependabot bot force-pushed the dependabot/cargo/hpo-0.10.1 branch from dd3d74d to f617c16 Compare August 12, 2024 23:25
Bumps [hpo](https://github.com/anergictcell/hpo) from 0.8.1 to 0.10.1.
- [Changelog](https://github.com/anergictcell/hpo/blob/main/CHANGELOG.md)
- [Commits](anergictcell/hpo@v0.8.1...v0.10.1)

---
updated-dependencies:
- dependency-name: hpo
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/cargo/hpo-0.10.1 branch from f617c16 to dcd10f3 Compare August 20, 2024 00:03
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dependabot bot commented on behalf of github Sep 9, 2024

Superseded by #209.

@dependabot dependabot bot closed this Sep 9, 2024
auto-merge was automatically disabled September 9, 2024 23:56

Pull request was closed

@dependabot dependabot bot deleted the dependabot/cargo/hpo-0.10.1 branch September 9, 2024 23:57
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