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Add support for pandas 2.0 support + lock versions #84

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merged 7 commits into from
Aug 29, 2023
Merged

Add support for pandas 2.0 support + lock versions #84

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9727a98
fix deprecated function
bedroesb Aug 29, 2023
5238c70
lock versions
bedroesb Aug 29, 2023
ba2fd64
lock pandas
bedroesb Aug 29, 2023
225a3bc
full version
bedroesb Aug 29, 2023
ef6e6da
update requirements
bedroesb Aug 29, 2023
6034080
fix greater than sign
bedroesb Aug 29, 2023
e89dcf2
VERSION
bedroesb Aug 29, 2023
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3 changes: 3 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
@@ -1,2 +1,5 @@
.vscode/launch.json
.secret.yml
build/
ena_upload_cli.egg-info/
ena_upload/__pycache__/
2 changes: 1 addition & 1 deletion ena_upload/templates/ENA_template_runs.xml
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Expand Up @@ -11,7 +11,7 @@ def attributetest(row, column):
xmlns:xi="http://www.w3.org/2001/XInclude"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:noNamespaceSchemaLocation="ftp://ftp.sra.ebi.ac.uk/meta/xsd/sra_1_6/SRA.run.xsd">
<py:for each="alias, experiment_alias in run_groups.iteritems()">
<py:for each="alias, experiment_alias in run_groups.items()">
<RUN alias="${alias}" center_name="${center}">
<EXPERIMENT_REF refname="${experiment_alias}"/>
<DATA_BLOCK>
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12 changes: 6 additions & 6 deletions requirements.txt
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@@ -1,6 +1,6 @@
genshi
lxml
pandas>=1.2
pyyaml
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@bgruening something like this?

requests
openpyxl
genshi==0.7.*
lxml==4.9.3, <= 5.0.0
pandas>=2.0.3 , <= 3.0.0
pyyaml==5.*
requests==2.31.0 , <= 3.0.0
openpyxl==3.1.2 , <= 4.0.0
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