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indel-discovery

Here are 5 public repositories matching this topic...

tseemann / snippy

✂️ ⚡ Rapid haploid variant calling and core genome alignment

bioinformatics snps genomics vcf variant-calling bacteria indel-discovery haploid fastq-analysis

Updated Jul 19, 2024
Perl

gear-genomics / tracy

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

sequencing alignment crispr-analysis variant-calling pcr tracy crispr-cas9 sanger-chromatograms indel-discovery chromatogram sanger-trace-alignment sanger-sequencing pcr-products genetic-engineering indel

Updated Oct 31, 2024
C++

gear-genomics / indigo

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

sequencing variants alignment crispr-analysis indigo variant-calling pcr indels crispr-cas9 sanger-chromatograms indel-discovery alleles gear-genomics sanger-sequencing pcr-products chromatogram-traces

Updated Oct 31, 2024
JavaScript

mcgml / AmpliconRealigner

Tool for realigning soft-clipped bases from amplicon reads

bioinformatics next-generation-sequencing indel-discovery

Updated Oct 5, 2022
Java

zlye / RVE

Code used to discover structural variants, SNP, Indels that were applied to rare variant analysis

vcf structural-variation indel-discovery

Updated Mar 23, 2022
Python

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