Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

A tool for downloading HLA alleles, epitopes and frequencies

GAT (Generic Genome-Wide Association Tool)

Extract alleles from genome assemblies

A command-line parser for VCF files designed for population genetics analyses.

R package to find samples that represent all variables

An application that handles and manipulates functions and variables related to the type of blood system: ABO System.

Script for interactive download schemas and definitions for any bigsdb installation using its api. Useful for downloading wg/cgMLST genes and alleles.

This is simple project to simulate Alleles

Create admixture model files (*.F, *.alleles) based on WBBC project of Westlake University.