Rename T to temperature

tardis/analysis/opacities.py

@@ -372,15 +372,15 @@ def _calc_planck_mean_opacity(self):
 
         for i in range(self.nshells):
             delta_nu = self.nu_bins[1:] - self.nu_bins[:-1]
-            T = self.mdl.plasma.t_rad[i]
-            bb_nu = Blackbody(T)
+            temperature = self.mdl.plasma.t_rad[i]
+            bb_nu = Blackbody(temperature)
 
             tmp = (
                 bb_nu(self.nu_bins[:-1])                
                 * delta_nu
                 * self.kappa_tot[:, 0]
             ).sum()
-            tmp /= (bb_nu(self.nu_bins[:-1], T) * delta_nu).sum()
+            tmp /= (bb_nu(self.nu_bins[:-1], temperature) * delta_nu).sum()
 
             kappa_planck_mean[i] = tmp
 

tardis/montecarlo/base.py

@@ -203,7 +203,7 @@ def _initialize_geometry_arrays(self, model):
         self.r_outer_cgs = model.r_outer.to("cm").value
         self.v_inner_cgs = model.v_inner.to("cm/s").value
 
-    def _initialize_packets(self, T, no_of_packets, iteration, radius):
+    def _initialize_packets(self, temperature, no_of_packets, iteration, radius):
         # the iteration is added each time to preserve randomness
         # across different simulations with the same temperature,
         # for example. We seed the random module instead of the numpy module
@@ -213,7 +213,7 @@ def _initialize_packets(self, T, no_of_packets, iteration, radius):
         rng = np.random.default_rng(seed=seed)
         seeds = rng.choice(MAX_SEED_VAL, no_of_packets, replace=True)
         radii, nus, mus, energies = self.packet_source.create_packets(
-            T, no_of_packets, rng, radius
+            temperature, no_of_packets, rng, radius
         )
         mc_config_module.packet_seeds = seeds
         self.input_r = radii

tardis/montecarlo/montecarlo_numba/formal_integral.py

@@ -725,12 +725,12 @@ def trapezoid_integration(array, h):
 
 
 @njit(**njit_dict_no_parallel)
-def intensity_black_body(nu, T):
+def intensity_black_body(nu, temperature):
     """Get the black body intensity at frequency nu
-    and temperature T"""
+    and temperature"""
     if nu == 0:
         return np.nan  # to avoid ZeroDivisionError
-    beta_rad = 1 / (KB_CGS * T)
+    beta_rad = 1 / (KB_CGS * temperature)
     coefficient = 2 * H_CGS * C_INV * C_INV
     return coefficient * nu * nu * nu / (np.exp(H_CGS * nu * beta_rad) - 1)
 

tardis/montecarlo/montecarlo_numba/formal_integral_cuda.py

@@ -475,23 +475,23 @@ def trapezoid_integration_cuda(arr, dx):
 
 
 @cuda.jit(device=True)
-def intensity_black_body_cuda(nu, T):
+def intensity_black_body_cuda(nu, temperature):
     """
     Get the black body intensity at frequency nu
-    and temperature T
+    and temperature
 
     Parameters
     ----------
     nu : float64
-    T : float64
+    temperature : float64
 
     Returns
     -------
     float64
     """
     if nu == 0:
         return np.nan  # to avoid ZeroDivisionError
-    beta_rad = 1 / (KB_CGS * T)
+    beta_rad = 1 / (KB_CGS * temperature)
     coefficient = 2 * H_CGS * C_INV * C_INV
     return coefficient * nu * nu * nu / (math.exp(H_CGS * nu * beta_rad) - 1)
 

tardis/montecarlo/montecarlo_numba/interaction.py

@@ -113,9 +113,9 @@ def sample_nu_free_free(numba_plasma, shell):
         Frequency of the free-free emission process
 
     """
-    T = numba_plasma.t_electrons[shell]
+    temperature = numba_plasma.t_electrons[shell]
     zrand = np.random.random()
-    return -K_B * T / H * np.log(zrand)
+    return -K_B * temperature / H * np.log(zrand)
 
 @njit(**njit_dict_no_parallel)
 def sample_nu_free_bound(numba_plasma, shell, continuum_id):

tardis/montecarlo/montecarlo_numba/tests/test_cuda_formal_integral.py

@@ -31,36 +31,36 @@
     not GPUs_available, reason="No GPU is available to test CUDA function"
 )
 @pytest.mark.parametrize(
-    ["nu", "T"],
+    ["nu", "temperature"],
     [
         (1e14, 1e4),
         (0, 1),
         (1, 1),
     ],
 )
-def test_intensity_black_body_cuda(nu, T):
+def test_intensity_black_body_cuda(nu, temperature):
     """
     Initializes the test of the cuda version
     against the numba implementation of the
     intensity_black_body to 15 decimals. This
     is done as both results have 15 digits of precision.
     """
     actual = np.zeros(3)
-    black_body_caller[1, 3](nu, T, actual)
+    black_body_caller[1, 3](nu, temperature, actual)
 
-    expected = formal_integral_numba.intensity_black_body(nu, T)
+    expected = formal_integral_numba.intensity_black_body(nu, temperature)
 
     ntest.assert_allclose(actual, expected, rtol=1e-14)
 
 
 @cuda.jit
-def black_body_caller(nu, T, actual):
+def black_body_caller(nu, temperature, actual):
     """
     This calls the CUDA function and fills out
     the array
     """
     x = cuda.grid(1)
-    actual[x] = formal_integral_cuda.intensity_black_body_cuda(nu, T)
+    actual[x] = formal_integral_cuda.intensity_black_body_cuda(nu, temperature)
 
 
 @pytest.mark.skipif(

tardis/montecarlo/montecarlo_numba/tests/test_numba_formal_integral.py

@@ -10,18 +10,18 @@
 from tardis.montecarlo.montecarlo_numba.numba_interface import NumbaModel
 
 @pytest.mark.parametrize(
-    ["nu", "T"],
+    ["nu", "temperature"],
     [
         (1e14, 1e4),
         (0, 1),
         (1, 1),
     ],
 )
-def test_intensity_black_body(nu, T):
+def test_intensity_black_body(nu, temperature):
     func = formal_integral.intensity_black_body
-    actual = func(nu, T)
+    actual = func(nu, temperature)
     print(actual, type(actual))
-    expected = intensity_black_body(nu, T)
+    expected = intensity_black_body(nu, temperature)
     ntest.assert_almost_equal(actual, expected)
 
 

tardis/montecarlo/packet_source.py

@@ -53,7 +53,7 @@ def create_uniform_packet_energies(no_of_packets, rng):
         return np.ones(no_of_packets) / no_of_packets
 
     @staticmethod
-    def create_blackbody_packet_nus(T, no_of_packets, rng, l_samples=1000):
+    def create_blackbody_packet_nus(temperature, no_of_packets, rng, l_samples=1000):
         """
         Create packet :math:`\\nu` distributed using the algorithm described in
         Bjorkman & Wood 2001 (page 4) which references
@@ -76,8 +76,7 @@ def create_blackbody_packet_nus(T, no_of_packets, rng, l_samples=1000):
 
         Parameters
         ----------
-        T : float
-            temperature
+        temperature : float
         no_of_packets : int
         l_samples : int
             number of l_samples needed in the algorithm
@@ -100,7 +99,7 @@ def create_blackbody_packet_nus(T, no_of_packets, rng, l_samples=1000):
         xis_prod = np.prod(xis[1:], 0)
         x = ne.evaluate("-log(xis_prod)/l")
 
-        return x * (const.k_B.cgs.value * T) / const.h.cgs.value
+        return x * (const.k_B.cgs.value * temperature) / const.h.cgs.value
 
 
 class BlackBodySimpleSource(BasePacketSource):
@@ -109,13 +108,12 @@ class BlackBodySimpleSource(BasePacketSource):
     part.
     """
 
-    def create_packets(self, T, no_of_packets, rng, radius):
+    def create_packets(self, temperature, no_of_packets, rng, radius):
         """Generate black-body packet properties as arrays
 
         Parameters
         ----------
-        T : float64
-            Temperature
+        temperature : float64
         no_of_packets : int
             Number of packets
         rng : numpy random number generator
@@ -134,7 +132,7 @@ def create_packets(self, T, no_of_packets, rng, radius):
             Packet energies
         """
         radii = np.ones(no_of_packets) * radius
-        nus = self.create_blackbody_packet_nus(T, no_of_packets, rng)
+        nus = self.create_blackbody_packet_nus(temperature, no_of_packets, rng)
         mus = self.create_zero_limb_darkening_packet_mus(no_of_packets, rng)
         energies = self.create_uniform_packet_energies(no_of_packets, rng)
 

tardis/plasma/properties/continuum_processes.py

@@ -988,9 +988,9 @@ def calculate(self, t_electrons):
         @njit(error_model="numpy", fastmath=True)
         def nu_ff(shell):
 
-            T = t_electrons[shell]
+            temperature = t_electrons[shell]
             zrand = np.random.random()
-            return -K_B * T / H * np.log(zrand)
+            return -K_B * temperature / H * np.log(zrand)
 
         return nu_ff
 

tardis/util/base.py

@@ -285,7 +285,7 @@ def create_synpp_yaml(radial1d_mdl, fname, shell_no=0, lines_db=None):
         yaml.dump(yaml_reference, stream=f, explicit_start=True)
 
 
-def intensity_black_body(nu, T):
+def intensity_black_body(nu, temperature):
     """
     Calculate the intensity of a black-body according to the following formula
 
@@ -297,15 +297,15 @@ def intensity_black_body(nu, T):
     ----------
     nu : float
         Frequency of light
-    T : float
+    temperature : float
         Temperature in kelvin
 
     Returns
     -------
     Intensity : float
         Returns the intensity of the black body
     """
-    beta_rad = 1 / (k_B_cgs * T)
+    beta_rad = 1 / (k_B_cgs * temperature)
     coefficient = 2 * h_cgs / c_cgs**2
     intensity = ne.evaluate(
         "coefficient * nu**3 / " "(exp(h_cgs * nu * beta_rad) -1 )"