Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[WIP] Refactor LCA database to contain all the information. #537

Merged
merged 15 commits into from
Dec 12, 2018

Conversation

ctb
Copy link
Contributor

@ctb ctb commented Aug 23, 2018

Note, this is a merge into #533, which makes LCA databases into first-class citizens for sourmash search and sourmash gather.

This has actually been tested fairly thoroughly since I've been using it on genbank and comparing the results to sourmash gather on an SBT :). But the code is still ugly...

  • Is it mergeable?
  • make test Did it pass the tests?
  • make coverage Is the new code covered?
  • Did it change the command-line interface? Only additions are allowed
    without a major version increment. Changing file formats also requires a
    major version number increment.
  • Was a spellchecker run on the source code and documentation after
    changes were made?

@ctb ctb merged commit 23e33b3 into add/search_gather_lca_db Dec 12, 2018
@ctb ctb deleted the trial/refactor_lca_db branch December 12, 2018 20:16
@ctb ctb mentioned this pull request Dec 14, 2019
5 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants