[c++] Depend on core 2.17.0

apis/python/setup.py

@@ -291,7 +291,7 @@ def run(self):
         "scanpy>=1.9.2",
         "scipy",
         "somacore==1.0.4",
-        "tiledb~=0.22.2",
+        "tiledb~=0.23.0",
         "typing-extensions",  # Note "-" even though `import typing_extensions`
     ],
     extras_require={

apis/python/tests/test_platform_config.py

@@ -66,8 +66,11 @@ def test_platform_config(adata):
             assert x_arr.attr("soma_data").filters == [tiledb.NoOpFilter()]
             assert x_arr.dim("soma_dim_0").tile == 6
             assert x_arr.dim("soma_dim_0").filters == [tiledb.ZstdFilter(level=2)]
-            assert x_arr.dim("soma_dim_1").filters == []
-
+            # As of 2.17.0 this is the default when empty filter-list, or none at all,
+            # is requested. Those who want truly no filtering can request a no-op filter.
+            assert list(x_arr.dim("soma_dim_1").filters) == [
+                tiledb.ZstdFilter(level=-1)
+            ]
             var_df = exp.ms["RNA"].var
             var_arr = var_df._handle.reader
             assert var_arr.dim("soma_joinid").filters == [tiledb.ZstdFilter(level=1)]

apis/r/DESCRIPTION

@@ -42,7 +42,7 @@ Imports:
     Matrix,
     stats,
     bit64,
-    tiledb (>= 0.20.3),
+    tiledb (>= 0.21.0),
     arrow,
     utils,
     fs,

apis/r/tools/get_tarball.R

@@ -1,8 +1,8 @@
 #!/usr/bin/env Rscript
 
 ## version pinning info
-tiledb_core_version <- "2.16.2"
-tiledb_core_sha1 <- "07b65de"
+tiledb_core_version <- "2.17.0"
+tiledb_core_sha1 <- "93c173d"
 
 if ( ! dir.exists("inst/") ) {
     stop("No 'inst/' directory. Exiting.", call. = FALSE)

libtiledbsoma/cmake/Modules/FindTileDB_EP.cmake

@@ -58,8 +58,8 @@ else()
     # NB When updating the pinned URLs here, please also update in file apis/r/tools/get_tarball.R
     if(DOWNLOAD_TILEDB_PREBUILT)
         if (WIN32) # Windows
-          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.2/tiledb-windows-x86_64-2.16.2-07b65de.zip")
-          SET(DOWNLOAD_SHA1 "1cda23235ceeff70cb2b30e0c0e22fcd9fd83b51")
+          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.17.0/tiledb-windows-x86_64-2.17.0-93c173d.zip")
+          SET(DOWNLOAD_SHA1 "d43589b22de95d45b40de9918d105a6174ec352e")
         elseif(APPLE) # OSX
 
           # Status quo as of 2023-05-18:
@@ -76,22 +76,22 @@ else()
           #   o CMAKE_SYSTEM_PROCESSOR is x86_64
 
           if (CMAKE_OSX_ARCHITECTURES STREQUAL x86_64)
-            SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.2/tiledb-macos-x86_64-2.16.2-07b65de.tar.gz")
-            SET(DOWNLOAD_SHA1 "355233cee1515857c91b2f12fe4f7bbc1ac02465")
+            SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.17.0/tiledb-macos-x86_64-2.17.0-93c173d.tar.gz")
+            SET(DOWNLOAD_SHA1 "9a232015cbf09c5bd37375537cef80a382e1ffa4")
           elseif (CMAKE_OSX_ARCHITECTURES STREQUAL arm64)
-            SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.2/tiledb-macos-arm64-2.16.2-07b65de.tar.gz")
-            SET(DOWNLOAD_SHA1 "5aad92b76e6fe3f7129f514ed926ef1c8af4bfa3")
+            SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.17.0/tiledb-macos-arm64-2.17.0-93c173d.tar.gz")
+            SET(DOWNLOAD_SHA1 "b861b90b462963db44fe0217087fac3510fd6293")
           elseif (CMAKE_SYSTEM_PROCESSOR MATCHES "(x86_64)|(AMD64|amd64)|(^i.86$)")
-            SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.2/tiledb-macos-x86_64-2.16.2-07b65de.tar.gz")
-            SET(DOWNLOAD_SHA1 "355233cee1515857c91b2f12fe4f7bbc1ac02465")
+            SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.17.0/tiledb-macos-x86_64-2.17.0-93c173d.tar.gz")
+            SET(DOWNLOAD_SHA1 "9a232015cbf09c5bd37375537cef80a382e1ffa4")
           elseif (CMAKE_SYSTEM_PROCESSOR MATCHES "^aarch64" OR CMAKE_SYSTEM_PROCESSOR MATCHES "^arm")
-            SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.2/tiledb-macos-arm64-2.16.2-07b65de.tar.gz")
-            SET(DOWNLOAD_SHA1 "5aad92b76e6fe3f7129f514ed926ef1c8af4bfa3")
+            SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.17.0/tiledb-macos-arm64-2.17.0-93c173d.tar.gz")
+            SET(DOWNLOAD_SHA1 "b861b90b462963db44fe0217087fac3510fd6293")
           endif()
 
         else() # Linux
-          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.16.2/tiledb-linux-x86_64-2.16.2-07b65de.tar.gz")
-          SET(DOWNLOAD_SHA1 "b9fc44a104f31a9348a399e55ef9e32903b99590")
+          SET(DOWNLOAD_URL "https://github.com/TileDB-Inc/TileDB/releases/download/2.17.0/tiledb-linux-x86_64-2.17.0-93c173d.tar.gz")
+          SET(DOWNLOAD_SHA1 "5c04c07a73d3fe48a9ba8f3ad8af5e1912a39ce8")
         endif()
 
         ExternalProject_Add(ep_tiledb
@@ -113,8 +113,8 @@ else()
     else() # Build from source
         ExternalProject_Add(ep_tiledb
           PREFIX "externals"
-          URL "https://github.com/TileDB-Inc/TileDB/archive/2.16.2.zip"
-          URL_HASH SHA1=d54ff7fc4c3a1c5afb1027bab1ba011ae47c3d79
+          URL "https://github.com/TileDB-Inc/TileDB/archive/2.17.0.zip"
+          URL_HASH SHA1=bbf5b34fec1c729f048f48bf1a0f03abb447d7de
           DOWNLOAD_NAME "tiledb.zip"
           CMAKE_ARGS
             -DCMAKE_INSTALL_PREFIX=${EP_INSTALL_PREFIX}