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sims-lab

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  1. CapCruncher CapCruncher Public

    Analysis tool for NG-Capture-C, Tri-C and Tiled-C data

    Python 6 3

  2. ccb-wiki ccb-wiki Public

    Wiki documenting the CBRG cluster setup

    Python 2

  3. FlyThirst FlyThirst Public

    Park, Croset et al. single-cell analysis

    2

  4. scenic scenic Public

    Pipeline to run SCENIC analysis (pySCENIC)

    Python 1 1

  5. cloneseq cloneseq Public

    Find barcodes in single cell RNASeq data

    Python

  6. pipeline_template pipeline_template Public template

    Template of pipeline using cgatcore

    Python

Repositories

Showing 8 of 8 repositories
  • CapCruncher Public

    Analysis tool for NG-Capture-C, Tri-C and Tiled-C data

    sims-lab/CapCruncher’s past year of commit activity
    Python 6 GPL-3.0 3 4 6 Updated Sep 1, 2024
  • simulated_ngs_datasets Public

    Simulated next-generation sequencing datasets

    sims-lab/simulated_ngs_datasets’s past year of commit activity
    R 0 0 0 0 Updated Mar 17, 2022
  • pipeline_rnaseq_hisat2 Public template

    A pipeline for processing RNA-seq data using cgatcore and HISAT2.

    sims-lab/pipeline_rnaseq_hisat2’s past year of commit activity
    Python 0 1 1 0 Updated Feb 17, 2022
  • FlyThirst Public

    Park, Croset et al. single-cell analysis

    sims-lab/FlyThirst’s past year of commit activity
    2 0 0 0 Updated Feb 3, 2022
  • pipeline_template Public template

    Template of pipeline using cgatcore

    sims-lab/pipeline_template’s past year of commit activity
    Python 0 0 2 0 Updated Dec 13, 2021
  • scenic Public

    Pipeline to run SCENIC analysis (pySCENIC)

    sims-lab/scenic’s past year of commit activity
    Python 1 1 2 0 Updated Dec 7, 2021
  • ccb-wiki Public

    Wiki documenting the CBRG cluster setup

    sims-lab/ccb-wiki’s past year of commit activity
    Python 2 0 8 0 Updated Jul 20, 2021
  • cloneseq Public

    Find barcodes in single cell RNASeq data

    sims-lab/cloneseq’s past year of commit activity
    Python 0 0 0 0 Updated Nov 19, 2019

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