Repositories list

• CapCruncher

  Public
  Analysis tool for NG-Capture-C, Tri-C and Tiled-C data

  Python

  •

  GNU General Public License v3.0

  •3•6•5•3•Updated Jan 16, 2025Jan 16, 2025

• simulated_ngs_datasets

  Public
  Simulated next-generation sequencing datasets

  R

  •0•0•0•0•Updated Mar 17, 2022Mar 17, 2022

• pipeline_rnaseq_hisat2

  Public template
  A pipeline for processing RNA-seq data using cgatcore and HISAT2.

  Python

  •1•0•1•0•Updated Feb 17, 2022Feb 17, 2022

• FlyThirst

  Public
  Park, Croset et al. single-cell analysis

  0•2•0•0•Updated Feb 3, 2022Feb 3, 2022

• pipeline_template

  Public template
  Template of pipeline using cgatcore

  Python

  •0•0•2•0•Updated Dec 13, 2021Dec 13, 2021

• scenic

  Public
  Pipeline to run SCENIC analysis (pySCENIC)

  Python

  •1•1•2•0•Updated Dec 7, 2021Dec 7, 2021

• ccb-wiki

  Public
  Wiki documenting the CBRG cluster setup

  Python

  •0•2•8•0•Updated Jul 20, 2021Jul 20, 2021

• cloneseq

  Public
  Find barcodes in single cell RNASeq data

  Python

  •0•0•0•0•Updated Nov 19, 2019Nov 19, 2019