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faster reading of h5ad file (~18X faster) #3365

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This PR is for faster reading of h5ad file (~18X faster).

Time
Original 74.79
Updated 4.09
Speedup 18.27

Testing was done in AWS m7i.24xlarge

  • Closes #
  • Tests included or not required because:
  • Release notes not necessary because:

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codecov bot commented Nov 14, 2024

Codecov Report

Attention: Patch coverage is 21.95122% with 64 lines in your changes missing coverage. Please review.

Project coverage is 58.65%. Comparing base (9d3c340) to head (3d2f06f).
Report is 11 commits behind head on main.

Files with missing lines Patch % Lines
src/scanpy/readwrite.py 21.95% 64 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##             main    #3365       +/-   ##
===========================================
- Coverage   77.26%   58.65%   -18.62%     
===========================================
  Files         111      111               
  Lines       12630    12946      +316     
===========================================
- Hits         9759     7593     -2166     
- Misses       2871     5353     +2482     
Files with missing lines Coverage Δ
src/scanpy/readwrite.py 68.64% <21.95%> (-9.11%) ⬇️

... and 53 files with indirect coverage changes

---- 🚨 Try these New Features:

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