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Add cell line annotation #187

Merged
merged 33 commits into from
Apr 3, 2023
Merged

Add cell line annotation #187

merged 33 commits into from
Apr 3, 2023

Commits on Dec 12, 2022

  1. add cell line annotation

    @wxicu
    wxicu committed Dec 12, 2022
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  2. update documentation

    @wxicu
    wxicu committed Dec 12, 2022
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  3. reformat the documentation and fix the function parameter type

    @wxicu
    wxicu committed Dec 12, 2022
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Commits on Dec 14, 2022

  1. add test script and comments in the metadata class

    @wxicu
    wxicu committed Dec 14, 2022
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Commits on Dec 28, 2022

  1. Fix list type 

    Signed-off-by: zethson <[email protected]>
    @Zethson
    Zethson committed Dec 28, 2022
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  2. Remove cache 

    Signed-off-by: zethson <[email protected]>
    @Zethson
    Zethson committed Dec 28, 2022
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Commits on Jan 6, 2023

  1. 1. simply random dataset 

    2. add statement for downloading
    @wxicu
    wxicu committed Jan 6, 2023
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Commits on Feb 11, 2023

  1. Merge branch 'theislab:development' into development

    @wxicu
    wxicu authored Feb 11, 2023
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Commits on Feb 15, 2023

  1. 1. resolve cell line annotation issues 

    2. add getinfo function
3. add bulk rna expression annotation
    @wxicu
    wxicu committed Feb 15, 2023
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Commits on Feb 20, 2023

  1. 1. add protein expression 

    2. make bulk rna part more efficient
    @wxicu
    wxicu committed Feb 20, 2023
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  2. upload cosmic tier1 gene annotation (it cannot be download automatica… 

    …lly)
    @wxicu
    wxicu committed Feb 20, 2023
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Commits on Mar 9, 2023

  1. 1. add test data 

    2. finish bulk rna / ccle / protein expression data annotation
    @wxicu
    wxicu committed Mar 9, 2023
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Commits on Mar 11, 2023

  1. remove zscore for proteomics data

    @wxicu
    wxicu committed Mar 11, 2023
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  2. resolve conflict

    @wxicu
    wxicu committed Mar 11, 2023
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Commits on Mar 13, 2023

  1. Update pertpy/tools/_metadata.py 

    Change downloading description

Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  2. Update pertpy/tools/_metadata.py 

    Change downloading description

Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  3. Update pertpy/tools/_metadata.py 

    Change downloading description

Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  4. Update pertpy/tools/_metadata.py 

    Change downloading description

Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  5. Update pertpy/tools/_metadata.py 

    remove unused code

Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  6. Update pertpy/tools/_metadata.py 

    Change downloading description

Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  7. Update pertpy/tools/_metadata.py 

    Change downloading description

Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  8. Update pertpy/tools/_metadata.py 

    Change downloading description

Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  9. Update pertpy/tools/_metadata.py 

    Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  10. Update pertpy/tools/_metadata.py 

    Co-authored-by: Lukas Heumos <[email protected]>
    @wxicu @Zethson
    wxicu and Zethson authored Mar 13, 2023
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  11. 1. fix test bug 

    2. docstring
    @wxicu
    wxicu committed Mar 13, 2023
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Commits on Mar 23, 2023

  1. 1. change class structure 

    2. add another cell line metadata
    @wxicu
    wxicu committed Mar 23, 2023
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  2. change doc

    @wxicu
    wxicu committed Mar 23, 2023
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Commits on Mar 24, 2023

  1. Merge branch 'development' into development

    @Zethson
    Zethson authored Mar 24, 2023
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Commits on Mar 30, 2023

  1. Merge branch 'development' of https://github.com/theislab/pertpy into… 

    … wxicu/development
    @Zethson
    Zethson committed Mar 30, 2023
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  2. Refactoring 

    Signed-off-by: zethson <[email protected]>
    @Zethson
    Zethson committed Mar 30, 2023
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Commits on Apr 3, 2023

  1. refactor 

    Signed-off-by: zethson <[email protected]>
    @Zethson
    Zethson committed Apr 3, 2023
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  2. refactor 

    Signed-off-by: zethson <[email protected]>
    @Zethson
    Zethson committed Apr 3, 2023
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  3. Merge branch 'development' into development

    @Zethson
    Zethson authored Apr 3, 2023
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