Merge pull request #108 from scikit-tda/saul/new-deploy-process

Migration to GitHub actions and readthedocs

.github/workflows/python-app.yml

@@ -0,0 +1,90 @@
+# This workflow will install Python dependencies, run tests and lint with a single version of Python
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Test project
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  test:
+    strategy:
+      matrix:
+        python-version: [3.6, 3.7, 3.8]
+        os: ["ubuntu-latest", "macos-latest"]
+    runs-on: ${{ matrix.os }}
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install flake8 pytest-cov Cython
+        pip install -e ".[testing]"
+    - name: Lint with flake8
+      run: |
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with pytest
+      run: |
+        pytest --cov ripser
+    - name: Upload coverage results
+      run: |
+        bash <(curl -s https://codecov.io/bash)
+
+  test-conda:
+    runs-on: macos-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [3.6, 3.7, 3.8]
+
+    steps:
+      - uses: actions/checkout@v2
+      - uses: conda-incubator/setup-miniconda@v1
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          activate-environment: test
+      - name: Set up conda
+        shell: bash -l {0}
+        run: |    
+          conda install numpy pandas scipy matplotlib pytest cython
+          python setup.py install
+      - name: Test with pytest
+        shell: bash -l {0}
+        run: |
+          pytest .
+
+  test-on-windows:
+    runs-on: windows-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [3.6, 3.7, 3.8]
+
+    steps:
+      - uses: actions/checkout@v2
+      - uses: conda-incubator/setup-miniconda@v1
+        with:
+          auto-update-conda: true
+          python-version: ${{ matrix.python-version }}
+          activate-environment: test
+      - name: Set up conda
+        shell: bash -l {0}
+        run: |    
+          conda install numpy pandas scipy matplotlib pytest libpython cython
+          python setup.py install
+      - name: Test with pytest
+        shell: bash -l {0}
+        run: |
+          pytest .

.github/workflows/python-publish.yml

@@ -9,24 +9,61 @@ on:
   workflow_dispatch:
 
 jobs:
-  deploy:
+  deploy-unix:
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [3.6, 3.7, 3.8]
 
-    runs-on: ubuntu-latest
+    runs-on: "ubuntu-latest"
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install setuptools wheel twine Cython numpy pytest
+          python setup.py install
+      - name: Run tests
+        run: pytest .
+      - name: Build and publish
+        env:
+          TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+          TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+        run: |
+          python setup.py sdist
+          twine upload --skip-existing dist/*
+
+  deploy-windows-pip:
+    strategy:
+      fail-fast: false
+      matrix:
+        arch: ['x86', 'x64']
+        python-version: [3.6, 3.7, 3.8]
+
+    runs-on: "windows-latest"
 
     steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python
-      uses: actions/setup-python@v2
-      with:
-        python-version: '3.x'
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install setuptools wheel twine
-    - name: Build and publish
-      env:
-        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
-        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
-      run: |
-        python setup.py sdist bdist_wheel
-        twine upload dist/*
+      - uses: actions/checkout@v2
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+          architecture: ${{ matrix.arch }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install setuptools wheel twine Cython numpy pytest
+          python setup.py install
+      - name: Run tests
+        run: pytest .
+      - name: Build and publish
+        env:
+          TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+          TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+        run: |
+          python setup.py bdist_wheel
+          twine upload --skip-existing dist/*

.readthedocs.yml

@@ -0,0 +1,11 @@
+version: 2
+
+python:
+  version: 3.7
+  install:
+    - requirements: docs/requirements.txt
+    - method: pip
+      path: .
+      extra_requirements:
+        - docs
+        - examples

CHANGELOG.md

@@ -1,3 +1,6 @@
+# 0.5.5
+    - Updating CI/CD pipeline.
+
 # 0.5.4
     - Fixing issue with inconsistent answers from different scipy.sparse formats, courtesy of Umberto Lupo
 

docs/requirements.txt

@@ -0,0 +1 @@
+cython