EG.6.1 with S:V705I (71 seqs, mainly in Israel, 10 countries), a singlet with further S:L455F and S:S494P

[NkRMnZr]

Defining Mutations: EG.6.1 > C18570T > G23675A(S:V705I)
Query: C1684T, C18570T, G23675A or "C18570T, G23675A ,T27346C,C17766T,C1684T" (edited)
Earliest seq: 2023-06-21 (EPI_ISL_17881223, Vienna, Austria)
Latest seq: 2023-09-01 (EPI_ISL_18246928, Israel)
Sampled Countries: Israel (30), USA (4: NJ/3; CA/1), Austria (1), Romania (1), Spain (1), Sweden (1), UK (1: EN)

Genomes:

EPI_ISL_17881223, EPI_ISL_18012493, EPI_ISL_18012553, EPI_ISL_18012571, EPI_ISL_18062670, EPI_ISL_18096812, EPI_ISL_18096882, EPI_ISL_18099933, EPI_ISL_18104599, EPI_ISL_18115872, EPI_ISL_18142615, EPI_ISL_18162893, EPI_ISL_18213446, EPI_ISL_18213482, EPI_ISL_18213494, EPI_ISL_18213509, EPI_ISL_18213519, EPI_ISL_18213522, EPI_ISL_18215380, EPI_ISL_18215489, EPI_ISL_18215493, EPI_ISL_18215506, EPI_ISL_18215519, EPI_ISL_18215523-18215524, EPI_ISL_18215535, EPI_ISL_18215542, EPI_ISL_18226787, EPI_ISL_18234037, EPI_ISL_18246918, EPI_ISL_18246928, EPI_ISL_18246937, EPI_ISL_18246943, EPI_ISL_18246978, EPI_ISL_18254738, EPI_ISL_18255326, EPI_ISL_18255377, EPI_ISL_18266240, EPI_ISL_18270125

UShER:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_15a94_6ae660.json?f_userOrOld=uploaded%20sample&label=id:node_7016264

Trivia:

• S:V705I is much less popolar than mutations on adjacent codons (Like 701V, 703I, 704L, 706V etc), only sampled about 900 times during the whole pandemic, on par with another mutations on same codon 705F

[FedeGueli]

Thank you added a more precise query even if those crazy tunisian samples are hard to disappear.

[NkRMnZr]

oh i forgot i had submission date filter on
C1684T, C18570T, G23675A shoud do

[NkRMnZr]

Tracking updates

09-24, 10 seqs from Canada, China and Israel

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_11460_b350.json?f_userOrOld=uploaded%20sample&label=id:node_7011837

EPI_ISL_18271399, EPI_ISL_18271426, EPI_ISL_18282775, EPI_ISL_18284828, EPI_ISL_18300164, EPI_ISL_18300175, EPI_ISL_18300178, EPI_ISL_18300193, EPI_ISL_18300196, EPI_ISL_18300210

09-29, 14 seqs from Greece, Israel, Sweden and USA
10-05, 8 seqs from Canada, Israel and USA

[FedeGueli]

adding a tracker : https://cov-spectrum.org/explore/World/AllSamples/Past3M/variants?nextcladePangoLineage=HK.3*&nucMutations1=C18570T%2CG23675A%2CT27346C%2CC17766T%2CC1684T&analysisMode=CompareToBaseline&

[NkRMnZr]

09-29, 14 seqs from Greece, Israel, Sweden and USA
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_21611_6ccd00.json?f_userOrOld=uploaded%20sample&label=id:node_6953664

EPI_ISL_18311759, EPI_ISL_18313578, EPI_ISL_18313598, EPI_ISL_18313615, EPI_ISL_18313625, EPI_ISL_18313634, EPI_ISL_18313706, EPI_ISL_18313713, EPI_ISL_18315119, EPI_ISL_18316059, EPI_ISL_18321674, EPI_ISL_18321728, EPI_ISL_18323837, EPI_ISL_18325210

[NkRMnZr]

10-05, 8 seqs from Canada, Israel and USA

EPI_ISL_18327655, EPI_ISL_18327659, EPI_ISL_18328802, EPI_ISL_18332560, EPI_ISL_18332571, EPI_ISL_18343587, EPI_ISL_18345511, EPI_ISL_18345525

Israel/ICH-741199251/2023|EPI_ISL_18345511|2023-09-20 with S:L455F and S:S494P

[FedeGueli]

Designated EG.6.1.2 via cov-lineages/pango-designation@4f9712c