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XBB.1.33 with S:L452R ORF1a:P1921S (nsp3_P1103S) ORF1a:R2875H (nsp4_R112H) (12 seqs, Italy and Spain) #464

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NkRMnZr opened this issue Jul 23, 2023 · 2 comments
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XBB.1.33 with S:L452R ORF1a:P1921S (nsp3_P1103S) ORF1a:R2875H (nsp4_R112H) (12 seqs, Italy and Spain) #464

NkRMnZr opened this issue Jul 23, 2023 · 2 comments
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Rapid review needed S:452

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@NkRMnZr
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NkRMnZr commented Jul 23, 2023

Defining Mutations: XBB.1.33 > C11644T > T22153A > C6026T(ORF1a:P1921S) > C28657T > G8889A(ORF1a:R2875H), T22917G(S:L452R)
Query: G8889A, T22917G , C28657T
Earliest seq: 2023-04-15 (EPI_ISL_17633390, Campania, Italy)
Latest seq: 2023-07-15 (EPI_ISL_18007826, Campania, Italy)
Sampled Countries: Italy (8), Spain (2)

Genomes: EPI_ISL_17633390, EPI_ISL_17711723, EPI_ISL_17885081, EPI_ISL_17949471, EPI_ISL_17949511, EPI_ISL_17988559, EPI_ISL_18007826, EPI_ISL_18010750, EPI_ISL_18010753-18010754

UShER:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_30f3b_d3ec10.json?f_userOrOld=uploaded%20sample&label=id:node_6622001
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NkRMnZr commented Jul 28, 2023

Tracking updates:

07-28, 2 seqs from Italy: EPI_ISL_18015514, EPI_ISL_18041752

@NkRMnZr NkRMnZr changed the title XBB.1.33 with ORF1a:P1921S (nsp3_P1103S) ORF1a:R2875H (nsp4_R112H) and S:L452R (10 seqs, Italy and Spain) XBB.1.33 with ORF1a:P1921S (nsp3_P1103S) ORF1a:R2875H (nsp4_R112H) and S:L452R (12 seqs, Italy and Spain) Jul 28, 2023
@FedeGueli FedeGueli changed the title XBB.1.33 with ORF1a:P1921S (nsp3_P1103S) ORF1a:R2875H (nsp4_R112H) and S:L452R (12 seqs, Italy and Spain) XBB.1.33 with S:L452R ORF1a:P1921S (nsp3_P1103S) ORF1a:R2875H (nsp4_R112H) (12 seqs, Italy and Spain) Jul 31, 2023
@NkRMnZr
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NkRMnZr commented Aug 13, 2023

no seqs for 2 weeks, tracking it privately

@NkRMnZr NkRMnZr closed this as not planned Won't fix, can't repro, duplicate, stale Aug 13, 2023
@NkRMnZr NkRMnZr mentioned this issue Sep 14, 2023
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