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I spotted a little cluster of three sequences of GJ.1.2 with S:N450D in three different far countries so i think it is worth proposing it immediately also keeping in mind that GJ.1.2 with just S:P521S as RBD mutations has been able to compete very well with other fast lineages with more RBD mutations pointing to a likely superior intrinsic fitness.
S:N450D is predicted to be slighty advantageous for ACE2 binding :
Interestingly the sequence from South Korea gained S:T478R further.
FedeGueli
changed the title
GJ.1.2 sublineage gained S:N450D ( 3 sequences South Korea , US, Singapore )
GJ.1.2 sublineage gained S:N450D ( 4 sequences South Korea , US, Singapore, France )
Jul 31, 2023
5th from Singapore, with S:T478R: EPI_ISL_18056566
FedeGueli
changed the title
GJ.1.2 sublineage gained S:N450D ( 4 sequences South Korea , US, Singapore, France )
GJ.1.2 sublineage gained S:N450D ( 5 sequences South Korea , US, Singapore, France )
Aug 3, 2023
I spotted a little cluster of three sequences of GJ.1.2 with S:N450D in three different far countries so i think it is worth proposing it immediately also keeping in mind that GJ.1.2 with just S:P521S as RBD mutations has been able to compete very well with other fast lineages with more RBD mutations pointing to a likely superior intrinsic fitness.
S:N450D is predicted to be slighty advantageous for ACE2 binding :
Interestingly the sequence from South Korea gained S:T478R further.
Tree:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1cf8e_ac48c0.json?c=userOrOld&label=id:node_7086733
Defining mutations: GJ.1.2 >> > S:N450D (A22910G )
Gisaid Query: A12878G, A22910G, C1549T, C7819G
Samples 3
South Korea, Singapore, Virginia
EPI_ISL_17970035, EPI_ISL_17996318, EPI_ISL_17996677
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