Fix minor documentation formatting issues in dancing links #34567
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Comments
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Author: Martin Pépin |
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Reviewer: Frédéric Chapoton |
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comment:3
ok, feu vert |
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Changed branch from u/MartinPepin/dancing_links_docs_formatting to |
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Changed commit from |
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comment:5
Is it normal that |
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comment:6
hmm, no. But this is the last commit that Volker has closed before the release. |
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comment:7
These files are not modified on By the way, what's the usual practice regarding merged branches? Can I remove the branch on trac or is there a policy to keep them? |
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<!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> ### 📚 Description Made small edits to the PR template, making it concise and tidy overall. <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on Depends on #12345: short description why this is a dependency Depends on #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35141 Reported by: Kwankyu Lee Reviewer(s): Kwankyu Lee, Tobias Diez
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<!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description Partial fix for pycodestyle E221, done using autopep8. E221 multiple spaces before operator <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35355 Reported by: Frédéric Chapoton Reviewer(s): Matthias Köppe
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<!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description The update #35184 broke the docs upload. Hopefully this is fixed with this PR. <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35356 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik, Kwankyu Lee
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<!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description <!-- Describe your changes here in detail. --> Follow-up from #35322. <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [ ] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35366 Reported by: Matthias Köppe Reviewer(s): Gonzalo Tornaría
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<!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description This is a follow-up on: - #35110 As preparation for #35322, which is changing more packages to implicit namespace packages, we remove `.all` imports from these packages throughout the Sage library. This is part of: - #29705 <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> - Depends on #35418 - Depends on #35358 <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35372 Reported by: Matthias Köppe Reviewer(s): Gonzalo Tornaría
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In sage/src/sage/libs/eclib/mwrank.pyx Line 843 should read 'minumum' instead of 'minimum'. <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35390 Reported by: yukibl Reviewer(s): Matthias Köppe
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<!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description fix all pep8 E303 warning in the folders whose name starts with the letter m purely done with autopep8: ``` $ autopep8 -i --select=E303 src/sage/m*/*.py $ autopep8 -i --select=E303 src/sage/m*/*/*.py ``` <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35409 Reported by: Frédéric Chapoton Reviewer(s): David Coudert
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<!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description Follow-up from #35056. Currently no codecov reports are displayed because the doc deployment workflow is failing and codecov by default only adds its checks if all other checks are passing. We change this setting so that codecov checks are always added, regardless of other failing tests. <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35412 Reported by: Tobias Diez Reviewer(s): Kwankyu Lee, Matthias Köppe, Tobias Diez
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…intSet`
Fixes sagemath#38939.
This PR changes the declaration of method `union` from `noexcept` to
`except *` to properly raise errors.
### 📝 Checklist
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- [ ] I have updated the documentation and checked the documentation
preview.
### ⌛ Dependencies
<!-- List all open PRs that this PR logically depends on. For example,
-->
<!-- - sagemath#12345: short description why this is a dependency -->
<!-- - sagemath#34567: ... -->
URL: sagemath#38944
Reported by: David Coudert
Reviewer(s): Travis Scrimshaw
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These tarballs are now hosted at a release of sagemath/sage-package as "assets", as `user.ox.ac.uk/~coml0531` is to be removed ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x ] The title is concise and informative. - [x ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38948 Reported by: Dima Pasechnik Reviewer(s): Julian Rüth
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> This PR is focused on addition of classes for Chow ring ideal and Chow ring of matroids. [Check relevant issue.](sagemath#37987) The ideals classes consist of the Chow ring ideal and Augmented Chow ring ideal, with Gröbner basis for each of them. The Chow ring class is an initial version. @tscrim ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38281 Reported by: 25shriya Reviewer(s): 25shriya, Travis Scrimshaw
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We include TESTS blocks in development documentation, so that they are visible at least during development. Then not to ruin CHANGES.html, we refactor doc build github workflow. The idea is to upload artifact `doc-develop` so that doc diffs are computed against the doc contained in the artifact. test: https://doc-develop--sagemath- test.netlify.app/html/en/reference/structure/sage/structure/sage_object Look around for new "TESTS" blocks. We also remove all spurious diffs caused by EXAMPLES tabs indices change. Tests for PR event: doc-develop artifact: https://github.com/kwankyu/sage/actions/runs/11787561475 doc-build workflow run: https://github.com/kwankyu/sage/actions/runs/11789320959/job/32837887930 Note that doc build for this PR itself fails here, of course. We may ignore this. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> sagemath#38468 URL: sagemath#38449 Reported by: Kwankyu Lee Reviewer(s): Dima Pasechnik
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> A few small quality of life improvements to the conda setup. Notably the environment files under `src` are now moved to the root, as the old env files there were non-functional and only confused users. Relately, removed the outdated,not working and untested instructions to use conda solely to provide the system packages for sage-the-distro. A few other improvements along the way: - Make conda in devcontainer working again by forcing mamba v1 (v2 was released a few days ago and breaks a few things related to the lock files) - Force usage of conda-forge everywhere (mixing of channels is no longer supported) ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38728 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik, Kwankyu Lee, Tobias Diez, Vincent Macri
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<!-- ^ Please provide a concise and informative title. --> The objective of this issue is to introduce a new class `MatchingCoveredGraph` through a new file `src/sage/graphs/matching_covered_graph.py` in order to address the decompositions, generation methods and related concepts in the theory of Matching Covered Graphs. <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> This PR introduces a new class pertaining to matching, namely `MatchingCoveredGraph` and aims to list out all functions fundamentally related to matching covered graph in the file `src/sage/graphs/matching_covered_graph.py`. The initialization and some basic class methods in this context, that shall be addressed through this PR, are described below: - [x] `__init__()`: Create a matching covered graph, that is a connected nontrivial graph wherein each edge participates in some perfect matching. - [x] `__repr__()`: Return a short string representation of the matching covered graph. - [x] `_subgraph_by_adding()`: Return the matching covered subgraph containing the given vertices and edges. - [x] `_upgrade_from_graph()`: Upgrade the given graph to a matching covered graph if eligible. - [x] `add_edge()`: Add an edge from vertex ``u`` to vertex ``v``. - [x] `add_edges()`: Add edges from an iterable container. - [x] `add_vertex()`: Add a vertex to the (matching covered) graph. - [x] `add_vertices()`: Add vertices to the (matching covered) graph from an iterable container of vertices. - [x] `allow_loops()`: Change whether loops are allowed in (matching covered) graphs. - [x] `allows_loops()`: Return whether loops are permitted in (matching covered) graph. - [x] `delete_vertex()`: Delete a vertex, removing all incident edges.0 - [x] `delete_vertices()`: Delete specified vertices form ``self``. - [x] `get_matching()`: Return a :class:`~EdgesView` of ``self._matching`` (a perfect matching of the (matching covered) graph computed at the initialization). - [x] `has_perfect_matching()`: Return whether the graph has a perfect matching. - [x] `update_matching()`: Update the perfect matching captured in ``self._matching``. <!-- v Why is this change required? What problem does it solve? --> This PR shall establish a foundation to address the methods related to matching covered graphs. <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Fixes sagemath#38216. Note that this issue fixes a small part of the above-mentioned issue. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> Nothing as of now (up to my knowledge). <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> cc: @dcoudert. URL: sagemath#38742 Reported by: Janmenjaya Panda Reviewer(s): David Coudert, Janmenjaya Panda
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…r graphs
This PR implements a non recursive version of method `gomory_hu_tree`
for graphs. This fixes the max recursion depth error reported in
https://ask.sagemath.org/question/79577/graphs-gomory-hu-tree-memory-
blow-up-and-max-recursion-depth/. The memory consumption is seriously
reduced.
Without this PR:
```py
sage: def test(g):
....: from datetime import datetime
....: import psutil
....: start_time = datetime.now()
....: process = psutil.Process(os.getpid())
....: mem = process.memory_info()[0] / float(2 ** 20)
....: print("Mem usage at start:", mem, "MiB")
....: try:
....: print("Vertices found:", g.order(), "and edges:",
g.size())
....: T = g.gomory_hu_tree(algorithm="FF")
....: except Exception as error:
....: print("Error detected:", error)
....: finally:
....: end_time = datetime.now()
....: print("Runtime =", end_time - start_time)
....: mem = process.memory_info()[0] / float(2 ** 20)
....: print("Mem usage at end:", mem, "MiB")
....:
sage: test(graphs.SierpinskiGasketGraph(5))
Mem usage at start: 241.0234375 MiB
Vertices found: 123 and edges: 243
Runtime = 0:00:00.243477
Mem usage at end: 252.1171875 MiB
sage: test(graphs.SierpinskiGasketGraph(6))
Mem usage at start: 252.1171875 MiB
Vertices found: 366 and edges: 729
Runtime = 0:00:02.050924
Mem usage at end: 324.30078125 MiB
sage: test(graphs.SierpinskiGasketGraph(7))
Mem usage at start: 324.30078125 MiB
Vertices found: 1095 and edges: 2187
Runtime = 0:00:21.207451
Mem usage at end: 968.97265625 MiB
sage: test(graphs.SierpinskiGasketGraph(8))
Mem usage at start: 950.25390625 MiB
Vertices found: 3282 and edges: 6561
Error detected: maximum recursion depth exceeded
Runtime = 0:04:36.154550
Mem usage at end: 6767.39453125 MiB
```
With this PR
```py
sage: test(graphs.SierpinskiGasketGraph(5))
Mem usage at start: 246.0859375 MiB
Vertices found: 123 and edges: 243
Runtime = 0:00:00.219925
Mem usage at end: 246.7109375 MiB
sage: test(graphs.SierpinskiGasketGraph(6))
Mem usage at start: 247.0234375 MiB
Vertices found: 366 and edges: 729
Runtime = 0:00:01.900761
Mem usage at end: 248.2734375 MiB
sage: test(graphs.SierpinskiGasketGraph(7))
Mem usage at start: 248.5859375 MiB
Vertices found: 1095 and edges: 2187
Runtime = 0:00:18.535145
Mem usage at end: 252.4921875 MiB
sage: test(graphs.SierpinskiGasketGraph(8))
Mem usage at start: 253.1171875 MiB
Vertices found: 3282 and edges: 6561
Runtime = 0:02:57.325506
Mem usage at end: 265.15234375 MiB
sage: test(graphs.SierpinskiGasketGraph(9))
Mem usage at start: 263.625 MiB
Vertices found: 9843 and edges: 19683
Runtime = 0:29:03.321870
Mem usage at end: 296.8359375 MiB
sage: test(graphs.SierpinskiGasketGraph(10))
Mem usage at start: 303.11328125 MiB
Vertices found: 29526 and edges: 59049
Runtime = 5:01:45.355463
Mem usage at end: 399.3984375 MiB
```
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URL: sagemath#38791
Reported by: David Coudert
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necessary for GAP 4.13.1 This was forgotten in sagemath#38804 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ x] The title is concise and informative. - [ x] The description explains in detail what this PR is about. - [ x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38875 Reported by: Dima Pasechnik Reviewer(s): Marc Culler
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…date in build/pkgs
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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This PR just adds the autogenerated package update (produced by `sage
--package update database_knotinfo 2024.10.1`) which was missing in
sagemath#38822.
@tscrim I'm sorry that I missed that in sagemath#38822.
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URL: sagemath#38885
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…cc-14-branch
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This PR updates the gcc spkg (and hence the gfortran spkg) to version
14.2.0. I tested that the spkg builds cleanly on macOS 15.1 (Sequoia)
using XCode 16.1 with both Intel and M1 CPUs. I also tested that it
builds cleanly on Ubuntu 22.04 using the system gmp and gcc. The
openblas spkg also builds on all three of those systems, although I
could not determine whether Sage was using the system gfortran or its
own gfortran for building openblas on Ubuntu.
There is a caveat. The gcc project does not currently have official
support for Apple Silicon. However, the gcc maintainer for darwin, Iain
Sandoe , maintains a [github site](https://github.com/iains/) containing
gcc source code with "experimental" support for Apple silicon, in
addition to Intel. This PR uses the
[gcc-14-branch](https://github.com/iains/gcc-14-branch) repository from
that site. The spkg fetches the tag [gcc-14.2-darwin-
r2](https://github.com/iains/gcc-14-branch/releases/tag/gcc-14.2-darwin-
r2) as a tarball and names the tarball as gfortran-14.2.0.tar.gz. The
github api does not support publishing hashes of tag downloads. So I
downloaded the tag tarball twice and verified that the files were the
same for both downloads. I used hashes of that file in checksums.ini.
<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes sagemath#12345". -->
No patches are needed for building on macOS with either CPU or on
Ubuntu. (cf PR sagemath#38855)
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URL: sagemath#38905
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> A bit of a minor cleanup of the meson build files. Extracted from sagemath#38872. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38910 Reported by: Tobias Diez Reviewer(s): Michael Orlitzky
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> With some compilers you get ``` src/sage/rings/integer.cp311- win_amd64.pyd.p/src/sage/rings/integer.pyx.c(62495): error C2124: divide or mod by zero ``` This is fixed by using `float(+- inf)`. Extracted from sagemath#38872 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38911 Reported by: Tobias Diez Reviewer(s): Travis Scrimshaw
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Fixes ``` ../src/sage/symbolic/ginac/archive.cpp(584): error C2039: 'mem_fun_ref': is not a member of 'std' C:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.41.34120\include\sstream(19): note: see declaration of 'std' ../src/sage/symbolic/ginac/archive.cpp(584): error C3861: 'mem_fun_ref': identifier not found ../src/sage/symbolic/ginac/archive.cpp(584): error C2672: 'for_each': no matching overloaded function found ``` with C++17. Extracted from sagemath#38872. <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38912 Reported by: Tobias Diez Reviewer(s): Travis Scrimshaw
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Make the dependency declaration in the meson build files more precise and add a few missing dependencies for some files. Extracted from sagemath#38872. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38913 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik
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`os.uname` is not available on Windows, so we replace it by `platform.system`. Also replace the `UNAME` variable in `sage.env` which is was only used in one place. Extracted from sagemath#38872 <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38914 Reported by: Tobias Diez Reviewer(s): Kwankyu Lee
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Fixes ``` C:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14 .41.34120\include\xkeycheck.h(341): warning C4005: 'register': macro redefinition ../src/sage/symbolic/ginac/constant.cpp(23): note: see previous definition of 'register' C:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14 .41.34120\include\xkeycheck.h(343): fatal error C1189: #error: The C++ Standard Library forbids macroizing the keyword "register". Enable warning C4005 to find the forbidden define. ``` Not sure why `register` was declared there in the first place. <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38915 Reported by: Tobias Diez Reviewer(s): Travis Scrimshaw
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Fixes ``` ../src/sage/symbolic/ginac/upoly-ginac.cpp(219): error C2440: '<function-style-cast>': cannot convert from 'size_t' to 'GiNaC::numeric' ../src/sage/symbolic/ginac/upoly-ginac.cpp(219): note: 'GiNaC::numeric::numeric': ambiguous call to overloaded function ``` by static casting. <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38916 Reported by: Tobias Diez Reviewer(s): Travis Scrimshaw
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Fixes sagemath#38900. The data structure of the graph was not stored. We add it to the stored data. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38919 Reported by: David Coudert Reviewer(s): Travis Scrimshaw
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Recent versions of Xcode have deprecated `-ld_classic`, so (a) we stop using it, (b) we filter warnings about it when doctesting, and (c) we filter some other warnings related to ld in Xcode. Without these changes, when building with the latest Xcode, I get many doctest failures because of the new warning ``` ld: warning: -ld_classic is deprecated and will be removed in a future release ``` ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [X] The title is concise and informative. - [X] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38931 Reported by: John H. Palmieri Reviewer(s): Marc Culler
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`make sagelib-clean` should not remove any `meson.build` files, but now it does, the one in `src/sage/ext/interpreters/`. As reported here: https://groups.google.com/g/sage- release/c/HHbr1W7vDoM/m/qLYBuIcpCAAJ This PR fixes this. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ x] The title is concise and informative. - [x ] The description explains in detail what this PR is about. - [ x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38934 Reported by: Dima Pasechnik Reviewer(s): Dima Pasechnik, Gonzalo Tornaría, Tobias Diez
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…intSet`
Fixes sagemath#38939.
This PR changes the declaration of method `union` from `noexcept` to
`except *` to properly raise errors.
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URL: sagemath#38944
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These tarballs are now hosted at a release of sagemath/sage-package as "assets", as `user.ox.ac.uk/~coml0531` is to be removed ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x ] The title is concise and informative. - [x ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38948 Reported by: Dima Pasechnik Reviewer(s): Julian Rüth
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Pkgconf 2.3.0 changes the PKG_PROG_PKG_CONFIG macro to error out instead of marking it as not found. Arguably this is the correct default for most but not for us, since we support building on macos where Apple, in their infinite wisdom, decided not to ship their dev tools with it. See also: https://github.com/pkgconf/pkgconf/blob/master/NEWS dnl PKG_PROG_PKG_CONFIG([MIN-VERSION], [ACTION-IF-NOT-FOUND]) dnl --------------------------------------------------------- dnl Since: 0.16 dnl dnl Search for the pkg-config tool and set the PKG_CONFIG variable to dnl first found in the path. Checks that the version of pkg-config found dnl is at least MIN-VERSION. If MIN-VERSION is not specified, 0.9.0 is dnl used since that's the first version where most current features of dnl pkg-config existed. dnl dnl If pkg-config is not found or older than specified, it will result dnl in an empty PKG_CONFIG variable. To avoid widespread issues with dnl scripts not checking it, ACTION-IF-NOT-FOUND defaults to aborting. dnl You can specify [PKG_CONFIG=false] as an action instead, which would dnl result in pkg-config tests failing, but no bogus error messages. <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38954 Reported by: Volker Braun Reviewer(s): Kwankyu Lee
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> a bug seen in, for example: https://doc-release--sagemath.netlify.app/ht ml/en/reference/structure/sage/structure/category_object#sage.structure. category_object.CategoryObject.variable_names Compare with the fixed page: https://doc-pr-38981--sagemath.netlify.app/ html/en/reference/structure/sage/structure/category_object#sage.structur e.category_object.CategoryObject.variable_names ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38981 Reported by: Kwankyu Lee Reviewer(s): Frédéric Chapoton
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> motivated by sagemath#38764 (comment) fixes sagemath#38764 (comment) example: ```sage sage: SloaneEncyclopedia[60843] # optional - sloane_database [1, 6, 21, 107, 47176870] sage: SloaneEncyclopedia[60843] # optional - !sloane_database Traceback (most recent call last): ... OSError: The Sloane Encyclopedia database must be installed. Use e.g. 'SloaneEncyclopedia.install()' to download and install it. ``` along the way, we - define `sloane_database` feature (I wonder why it was missing) - fix `SloaneEncyclopedia` with the code by @sheerluck: https://github.c om/sheerluck)sagemath#34655 (comment) 1418189098 - fix the problem of `solve()` for rubiks cube of silently choosing the gap algorithm even when an algorithm is explicitly specified. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38810 Reported by: Kwankyu Lee Reviewer(s):
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… job in CI Linux <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> fixes the failure seen in https://github.com/sagemath/sage/actions/runs/ 11869791506/job/33080484685 The cause is duplicate uploading of artifacts of the same name. Test: https://github.com/kwankyu/sage/actions/runs/11906298470/job/33178163324 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39003 Reported by: Kwankyu Lee Reviewer(s):
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> motivated by sagemath#38764 (comment) fixes sagemath#38764 (comment) example: ```sage sage: SloaneEncyclopedia[60843] # optional - sloane_database [1, 6, 21, 107, 47176870] sage: SloaneEncyclopedia[60843] # optional - !sloane_database Traceback (most recent call last): ... OSError: The Sloane Encyclopedia database must be installed. Use e.g. 'SloaneEncyclopedia.install()' to download and install it. ``` along the way, we - define `sloane_database` feature (I wonder why it was missing) - fix `SloaneEncyclopedia` with the code by @sheerluck: https://github.c om/sheerluck)sagemath#34655 (comment) 1418189098 - fix the problem of `solve()` for rubiks cube of silently choosing the gap algorithm even when an algorithm is explicitly specified. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38810 Reported by: Kwankyu Lee Reviewer(s):
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Fixes the meson build. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38982 Reported by: Tobias Diez Reviewer(s): Kwankyu Lee
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… job in CI Linux
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method
to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
<!-- v Why is this change required? What problem does it solve? -->
<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes sagemath#12345". -->
fixes the failure seen in https://github.com/sagemath/sage/actions/runs/
11869791506/job/33080484685
The cause is duplicate uploading of artifacts of the same name.
Test:
https://github.com/kwankyu/sage/actions/runs/11906298470/job/33178163324
### 📝 Checklist
<!-- Put an `x` in all the boxes that apply. -->
- [x] The title is concise and informative.
- [x] The description explains in detail what this PR is about.
- [x] I have linked a relevant issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation and checked the documentation
preview.
### ⌛ Dependencies
<!-- List all open PRs that this PR logically depends on. For example,
-->
<!-- - sagemath#12345: short description why this is a dependency -->
<!-- - sagemath#34567: ... -->
URL: sagemath#39003
Reported by: Kwankyu Lee
Reviewer(s):
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The ECM patch added in sagemath#38905 breaks some macOS installations. As it was added in order to support building ECM with gcc 14, which is a rather hypothetical situation, it's OK to drop it. This will fix sagemath#39039 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39040 Reported by: Dima Pasechnik Reviewer(s): Kwankyu Lee
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Component: documentation
Author: Martin Pépin
Branch:
1c9e627Reviewer: Frédéric Chapoton
Issue created by migration from https://trac.sagemath.org/ticket/34567
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