Follow-up to #38822: Add missing package update in build/pkgs

[soehms]

This PR just adds the autogenerated package update (produced by sage --package update database_knotinfo 2024.10.1) which was missing in #38822.

@tscrim I'm sorry that I missed that in #38822.

📝 Checklon

• The title is concise and informative.
• The description explains in detail what this PR is about.
• I have linked a relevant issue or discussion.
• I have created tests covering the changes.
• I have updated the documentation and checked the documentation preview.

⌛ Dependencies

[github-actions]

Documentation preview for this PR (built with commit 242a9a3; changes) is ready! 🎉
This preview will update shortly after each push to this PR.

[soehms]

Thanks!

[tscrim]

Upgrading to blocker since it breaks docbuilding when knotinfo is installed.

[soehms]

For the record:

After solving a merge conflict I tested locally sage -f -c database_knotinfo. This was the positive output:

[database_knotinfo-2024.10.1] [spkg-install] Copying database_knotinfo.egg-info to build/bdist.linux-x86_64/wheel/./database_knotinfo-2024.10.1-py3.12.egg-info
[database_knotinfo-2024.10.1] [spkg-install] running install_scripts
[database_knotinfo-2024.10.1] [spkg-install] creating build/bdist.linux-x86_64/wheel/database_knotinfo-2024.10.1.dist-info/WHEEL
[database_knotinfo-2024.10.1] [spkg-install] creating '/home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/database_knotinfo-2024.10.1/src/dist/.tmp-l7xwzrno/database_knotinfo-2024.10.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
[database_knotinfo-2024.10.1] [spkg-install] adding 'database_knotinfo/__init__.py'
[database_knotinfo-2024.10.1] [spkg-install] adding 'database_knotinfo/__version__.py'
[database_knotinfo-2024.10.1] [spkg-install] adding 'database_knotinfo/csv_data/knotinfo_data_complete.csv'
[database_knotinfo-2024.10.1] [spkg-install] adding 'database_knotinfo/csv_data/linkinfo_data_complete.csv'
[database_knotinfo-2024.10.1] [spkg-install] adding 'database_knotinfo-2024.10.1.dist-info/LICENSE'
[database_knotinfo-2024.10.1] [spkg-install] adding 'database_knotinfo-2024.10.1.dist-info/METADATA'
[database_knotinfo-2024.10.1] [spkg-install] adding 'database_knotinfo-2024.10.1.dist-info/WHEEL'
[database_knotinfo-2024.10.1] [spkg-install] adding 'database_knotinfo-2024.10.1.dist-info/top_level.txt'
[database_knotinfo-2024.10.1] [spkg-install] adding 'database_knotinfo-2024.10.1.dist-info/RECORD'
[database_knotinfo-2024.10.1] [spkg-install] removing build/bdist.linux-x86_64/wheel
[database_knotinfo-2024.10.1] [spkg-install] Successfully built database_knotinfo-2024.10.1-py3-none-any.whl
[database_knotinfo-2024.10.1] [spkg-install] Staged wheel file, staged /home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5/var/lib/sage/scripts/database_knotinfo/spkg-requirements.txt
[database_knotinfo-2024.10.1] Moving package files from temporary location /home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5/var/tmp/sage/build/database_knotinfo-2024.10.1/inst to /home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5
[database_knotinfo-2024.10.1] [spkg-pipinst] Found existing installation: database-knotinfo 2024.10.1
[database_knotinfo-2024.10.1] [spkg-pipinst] Uninstalling database-knotinfo-2024.10.1:
[database_knotinfo-2024.10.1] [spkg-pipinst]   Successfully uninstalled database-knotinfo-2024.10.1
[database_knotinfo-2024.10.1] [spkg-pipinst] Using pip 24.2 from /home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/pip (python 3.12)
[database_knotinfo-2024.10.1] [spkg-pipinst] Looking in links: /home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5/var/lib/sage/wheels
[database_knotinfo-2024.10.1] [spkg-pipinst] Processing /home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5/var/lib/sage/wheels/database_knotinfo-2024.10.1-py3-none-any.whl (from -r /home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5/var/lib/sage/scripts/database_knotinfo/spkg-requirements.txt (line 1))
[database_knotinfo-2024.10.1] [spkg-pipinst] Installing collected packages: database_knotinfo
[database_knotinfo-2024.10.1] [spkg-pipinst] Successfully installed database_knotinfo-2024.10.1
[database_knotinfo-2024.10.1] Running the test suite for database_knotinfo-2024.10.1...
[database_knotinfo-2024.10.1] [spkg-check] Testing: databases/ features/ knots/
[database_knotinfo-2024.10.1] [spkg-check] /home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5/bin/sage-venv-config:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
[database_knotinfo-2024.10.1] [spkg-check]   __import__('pkg_resources').require('sagemath-standard==10.5b9')
[database_knotinfo-2024.10.1] [spkg-check] /home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5/bin/sage-runtests:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
[database_knotinfo-2024.10.1] [spkg-check]   __import__('pkg_resources').require('sagemath-standard==10.5b9')
[database_knotinfo-2024.10.1] [spkg-check] Running doctests with ID 2024-11-13-09-34-54-1fda828e.
[database_knotinfo-2024.10.1] [spkg-check] Git branch: follow_up_38822
[database_knotinfo-2024.10.1] [spkg-check] Git ref: 10.5.beta9-2-g242a9a3a1f1-dirty
[database_knotinfo-2024.10.1] [spkg-check] Running with SAGE_LOCAL='/home/sebastian/devel/sage/local' and SAGE_VENV='/home/sebastian/devel/sage/local/var/lib/sage/venv-python3.12.5'
[database_knotinfo-2024.10.1] [spkg-check] Using --optional=database_knotinfo,sage
[database_knotinfo-2024.10.1] [spkg-check] Features to be detected: 4ti2,SAGE_SRC,benzene,bliss,buckygen,conway_polynomials,coxeter3,csdp,cvxopt,cvxopt,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_cubic_hecke,database_ellcurves,database_graphs,database_jones_numfield,database_knotinfo,dvipng,ecm,fpylll,fricas,gap_package_atlasrep,gap_package_design,gap_package_grape,gap_package_guava,gap_package_hap,gap_package_polenta,gap_package_polycyclic,gap_package_qpa,gap_package_quagroup,gfan,giac,glucose,graphviz,imagemagick,ipython,jmol,jupymake,jupyter_sphinx,kenzo,kissat,latte_int,lrcalc_python,lrslib,mathics,matroid_database,mcqd,meataxe,mpmath,msolve,nauty,networkx,numpy,palp,pandoc,pdf2svg,pdftocairo,pexpect,phitigra,pillow,plantri,polytopes_db,polytopes_db_4d,pplpy,primecountpy,ptyprocess,pycosat,pycryptosat,pynormaliz,pyparsing,python_igraph,requests,rpy2,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.libs.braiding,sage.libs.ecl,sage.libs.flint,sage.libs.gap,sage.libs.giac,sage.libs.homfly,sage.libs.linbox,sage.libs.m4ri,sage.libs.ntl,sage.libs.pari,sage.libs.singular,sage.misc.cython,sage.modular,sage.modules,sage.numerical.mip,sage.plot,sage.rings.complex_double,sage.rings.finite_rings,sage.rings.function_field,sage.rings.number_field,sage.rings.padics,sage.rings.polynomial.pbori,sage.rings.real_double,sage.rings.real_mpfr,sage.sat,sage.schemes,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,scipy,singular,sirocco,sphinx,symengine_py,sympy,tdlib,threejs,topcom
[database_knotinfo-2024.10.1] [spkg-check] Sorting sources by runtime so that slower doctests are run first....
[database_knotinfo-2024.10.1] [spkg-check] Doctesting 75 files using 8 threads.
[database_knotinfo-2024.10.1] [spkg-check] sage -t --long --warn-long 30.0 --random-seed=335768786530535268680430473548074358888 databases/findstat.py
[database_knotinfo-2024.10.1] [spkg-check]     [134 tests, 1.01s wall]
[database_knotinfo-2024.10.1] [spkg-check] sage -t --long --warn-long 30.0 --random-seed=335768786530535268680430473548074358888 databases/sql_db.py
[database_knotinfo-2024.10.1] [spkg-check]     [292 tests, 1.50s wall]
..............
[database_knotinfo-2024.10.1] [spkg-check]     [104 tests, 22.53s wall]
[database_knotinfo-2024.10.1] [spkg-check] sage -t --long --warn-long 30.0 --random-seed=335768786530535268680430473548074358888 knots/free_knotinfo_monoid.py
[database_knotinfo-2024.10.1] [spkg-check] **********************************************************************
[database_knotinfo-2024.10.1] [spkg-check] File "knots/free_knotinfo_monoid.py", line 411, in sage.knots.free_knotinfo_monoid.FreeKnotInfoMonoid.from_knot
[database_knotinfo-2024.10.1] [spkg-check] Warning: slow doctest:
[database_knotinfo-2024.10.1] [spkg-check]     FKIM.from_knot(K)                   # long time
[database_knotinfo-2024.10.1] [spkg-check] Test ran for 30.95s cpu, 30.96s wall
[database_knotinfo-2024.10.1] [spkg-check] Check ran for 0.00s cpu, 0.00s wall
[database_knotinfo-2024.10.1] [spkg-check]     [69 tests, 41.07s wall]
[database_knotinfo-2024.10.1] [spkg-check] sage -t --long --warn-long 30.0 --random-seed=335768786530535268680430473548074358888 knots/knotinfo.py
[database_knotinfo-2024.10.1] [spkg-check] **********************************************************************
[database_knotinfo-2024.10.1] [spkg-check] File "knots/knotinfo.py", line 2308, in sage.knots.knotinfo.KnotInfoBase.is_recoverable
[database_knotinfo-2024.10.1] [spkg-check] Warning: slow doctest:
[database_knotinfo-2024.10.1] [spkg-check]     KnotInfo.K12a_165.is_recoverable(unique=False)  # optional - database_knotinfo, long time
[database_knotinfo-2024.10.1] [spkg-check] Test ran for 36.38s cpu, 36.35s wall
[database_knotinfo-2024.10.1] [spkg-check] Check ran for 0.00s cpu, 0.00s wall
[database_knotinfo-2024.10.1] [spkg-check]     [362 tests, 48.37s wall]
[database_knotinfo-2024.10.1] [spkg-check] ----------------------------------------------------------------------
[database_knotinfo-2024.10.1] [spkg-check] All tests passed!
[database_knotinfo-2024.10.1] [spkg-check] ----------------------------------------------------------------------

Therefore, I set back to positive review.