Quick on the Draw
Pre-release
Pre-release
What's new in 0.22.1
Draw
- The
draw
module creates vectorized, publication-quality figures, directly from the output of SEISMIC-RNA'sfold
module. - Initially piloted in 0.22.0, drawing can now be run automatically as part of
wf
by including the--draw
flag. - The
draw
command will automatically color bases according to the reactivities used by SEISMIC-RNA to constrain the structure prediction, although this behavior can be disabled with the--no-color
flag. - When multiple structures are predicted, only the one with the best AUROC will be drawn by default, although any structure(s) can be specified with the
--struct-num
flag. - Many thanks to Fabrice Jossinet (@fjossinet) for developing RNArtistCore, the heart the
draw
module. - To install RNArtistCore, first download the latest release and save the
.jar
file in a safe place. Second, set the environmental variableRNARTISTCORE
to the full path to the.jar
file. It is recommended you do this by adding the lineexport RNARTISTCORE="/full/path/to/your/rnartistcore-X.X.X-SNAPSHOT-jar-with-dependencies.jar"
to your .bashrc or .zshrc file. - Installation instructions for RNArtistCore can also be found in a descriptive error message triggered by running the
draw
command when it is not installed.
Bug Fixes
- Fixed incorrect parsing of structure profiles generated from mask tables when using the draw module.
- Implemented safeguards against missing color and table files when drawing structures.
Full Changelog: v0.22.0...v0.22.1