RNArtistCore 0.4.6-SNAPSHOT

To use it you need java to be installed. From the command line type:

java -jar rnartistcore-0.4.6-SNAPSHOT-jar-with-dependencies.jar

If you see the usage message, it works.

The easiest way to start is to plot an RNA 2D from a database entry.

To plot the 12S ribosomal RNA, mitochondrial from RNACentral

java -jar rnartistcore-0.4.6-SNAPSHOT-jar-with-dependencies.jar -e URS00000CFF65 --with-svg -o /path/to/your/favorite/folder

To plot all the members of the GOLLD RNA family from Rfam

java -jar rnartistcore-0.4.6-SNAPSHOT-jar-with-dependencies.jar -e RF02032 --with-svg -o /path/to/your/favorite/folder

To plot the 3D structure of Oceanobacillus iheyensis group II intron from PDB

java -jar rnartistcore-0.4.6-SNAPSHOT-jar-with-dependencies.jar -e 4E8K --with-svg -o /path/to/your/favorite/folder

Once the computing done, go to to your favorite folder and open the SVG file. You will also find an RNArtistCore script (a file with a kts suffix). You can modify it with your favorite editor to change the theme of your 2D. Once the changes saved, re-run your script with:

java -jar rnartistcore-0.4.6-SNAPSHOT-jar-with-dependencies.jar /path/to/your/favorite/folder/your_script.kts

If you have some local files describing an RNA 2D or 3D (Bpseq, Vienna, CT, Stockholm, PDB formats), you can plot them with:

java -jar rnartistcore-0.4.6-SNAPSHOT-jar-with-dependencies.jar -f /path/to/your/structural_file

Once the computing done, go to the folder containing your structural file and open the SVG file. You will also find an RNArtistCore script (a file with a kts suffix). You can modify it with your favorite editor to change the theme of your 2D. Once the changes saved, re-run your script with:

java -jar rnartistcore-0.4.6-SNAPSHOT-jar-with-dependencies.jar /path/to/your_script.kts

RNArtistCore 0.4.5-SNAPSHOT

To use it you need java to be installed. From the command line type:

java -jar rnartistcore-0.4.5-SNAPSHOT-jar-with-dependencies.jar

If you see the usage message, it works.

The easiest way to start is to plot an RNA 2D from a database entry.

To plot the 12S ribosomal RNA, mitochondrial from RNACentral

java -jar rnartistcore-0.4.5-SNAPSHOT-jar-with-dependencies.jar -e URS00000CFF65 --with-svg -o /path/to/your/favorite/folder

To plot all the members of the GOLLD RNA family from Rfam

java -jar rnartistcore-0.4.5-SNAPSHOT-jar-with-dependencies.jar -e RF02032 --with-svg -o /path/to/your/favorite/folder

To plot the 3D structure of Oceanobacillus iheyensis group II intron from PDB

java -jar rnartistcore-0.4.5-SNAPSHOT-jar-with-dependencies.jar -e 4E8K --with-svg -o /path/to/your/favorite/folder

Once the computing done, go to to your favorite folder and open the SVG file. You will also find an RNArtistCore script (a file with a kts suffix). You can modify it with your favorite editor to change the theme of your 2D. Once the changes saved, re-run your script with:

java -jar rnartistcore-0.4.5-SNAPSHOT-jar-with-dependencies.jar /path/to/your/favorite/folder/your_script.kts

If you have some local files describing an RNA 2D or 3D (Bpseq, Vienna, CT, Stockholm, PDB formats), you can plot them with:

java -jar rnartistcore-0.4.5-SNAPSHOT-jar-with-dependencies.jar -f /path/to/your/structural_file

Once the computing done, go to the folder containing your structural file and open the SVG file. You will also find an RNArtistCore script (a file with a kts suffix). You can modify it with your favorite editor to change the theme of your 2D. Once the changes saved, re-run your script with:

java -jar rnartistcore-0.4.5-SNAPSHOT-jar-with-dependencies.jar /path/to/your_script.kts

RNArtistCore 0.4.4-SNAPSHOT

To use it you need java to be installed. From the command line type:

java -jar rnartistcore-0.4.4-SNAPSHOT-jar-with-dependencies.jar

If you see the usage message, it works. Now you need to write and run a DSL script.

RNArtistCore 0.3.8-SNAPSHOT

To use it you need java to be installed. From the command line type:

java -jar rnartistcore-0.3.8-SNAPSHOT-jar-with-dependencies.jar

If you see the usage message, it works. Now you need to write and run a DSL script. You can read this blog post to quickstart.