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Development #389

Merged
merged 49 commits into from
Mar 31, 2020
Merged

Development #389

merged 49 commits into from
Mar 31, 2020

Commits on Sep 11, 2019

  1. Guess mosaics (#337)

    @neurolabusc
    neurolabusc committed Sep 11, 2019
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Commits on Sep 13, 2019

  1. Avoid divide by zero regression

    @neurolabusc
    neurolabusc committed Sep 13, 2019
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Commits on Sep 16, 2019

  1. 'original' datatype for AFNI (https://afni.nimh.nih.gov/afni/communit… 

    …y/board/read.php?1,159214,159214#msg-159214)
    @neurolabusc
    neurolabusc committed Sep 16, 2019
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Commits on Sep 21, 2019

  1. Explicit exit code for missing input/output folder (https://discourse… 

    ….slicer.org/t/import-error-in-dicom-module/8511/7)
    @neurolabusc
    neurolabusc committed Sep 21, 2019
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Commits on Sep 26, 2019

  1. Detect GE Multi-Band (#336)

    @neurolabusc
    neurolabusc committed Sep 26, 2019
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Commits on Sep 27, 2019

  1. Improved slice re-ordering, handle missing instance numbers (#341)

    @neurolabusc
    neurolabusc committed Sep 27, 2019
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Commits on Oct 3, 2019

  1. Apple notarizing command-line tools (https://mjtsai.com/blog/2019/06/… 

    …17/notarizing-command-line-tools-for-macos-10-15/)
    @neurolabusc
    neurolabusc committed Oct 3, 2019
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Commits on Oct 8, 2019

  1. Windows NRRD gzip with '/' as file separator (https://discourse.slice… 

    …r.org/t/dti-averaging-of-b0-images/8639/7)
    @neurolabusc
    neurolabusc committed Oct 8, 2019
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Commits on Oct 10, 2019

  1. Update AppVeyor setting to build all branches.

    @ningfei
    ningfei committed Oct 10, 2019
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  2. Update CI status badges.

    @ningfei
    ningfei committed Oct 10, 2019
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  3. Fix 'max' not declared error.

    @ningfei
    ningfei committed Oct 10, 2019
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  4. Update documentation

    @neurolabusc
    neurolabusc committed Oct 10, 2019
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Commits on Oct 17, 2019

  1. Terse mode (#344)

    @neurolabusc
    neurolabusc committed Oct 17, 2019
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Commits on Oct 18, 2019

  1. BIDS ImageType tag for enhanced images (#345)

    @neurolabusc
    neurolabusc committed Oct 18, 2019
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Commits on Oct 19, 2019

  1. Ensure sliceMMarray is initialized (#347)

    @neurolabusc
    neurolabusc committed Oct 19, 2019
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Commits on Oct 29, 2019

  1. https://github.com/rordenlab/dcm2niix/issues/349

    @neurolabusc
    neurolabusc committed Oct 29, 2019
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Commits on Nov 1, 2019

  1. Create bval/bvec files for Siemens Diffusion sequences without gradie… 

    …nt tables (#352)
    @neurolabusc
    neurolabusc committed Nov 1, 2019
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  2. Detect single volume B=0 diffusion (#352)

    @neurolabusc
    neurolabusc committed Nov 1, 2019
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Commits on Nov 12, 2019

  1. Resolve discrepancy between tags (0020,1002; 0021,104F; 0054,0081) (#306 

    )
    @neurolabusc
    neurolabusc committed Nov 12, 2019
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Commits on Nov 14, 2019

  1. Report slice filenames (#353)

    @neurolabusc
    neurolabusc committed Nov 14, 2019
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Commits on Nov 16, 2019

  1. GE Multi-Echo kludge (#359)

    @neurolabusc
    neurolabusc committed Nov 16, 2019
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Commits on Nov 19, 2019

  1. Add notes for Philips functional sequences with missing slices (#357)

    @neurolabusc
    neurolabusc committed Nov 19, 2019
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  2. Fix regression for Windows OS

    @neurolabusc
    neurolabusc committed Nov 19, 2019
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Commits on Nov 26, 2019

  1. C arrays indexed from zero (#353 (comment))

    @neurolabusc
    neurolabusc committed Nov 26, 2019
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Commits on Dec 6, 2019

  1. Add support for Toshiba DWI (#362).

    @neurolabusc
    neurolabusc committed Dec 6, 2019
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Commits on Dec 15, 2019

  1. Philips research DWI sequences can generate unique scaling factor for… 

    … each volume. Allow '-m y' to stack these.
    @neurolabusc
    neurolabusc committed Dec 15, 2019
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Commits on Dec 20, 2019

  1. Philips slice-by-slice intensity scaling (#363)

    @neurolabusc
    neurolabusc committed Dec 20, 2019
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Commits on Jan 16, 2020

  1. Modify GEIIS thumbnail rejection heuristic (#367)

    @neurolabusc
    neurolabusc committed Jan 16, 2020
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Commits on Jan 27, 2020

  1. Update CMake message on static runtime error.

    @ningfei
    ningfei committed Jan 27, 2020
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  2. Suppress format overflow warning for GCC 7.1+.

    @ningfei
    ningfei committed Jan 27, 2020
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Commits on Feb 3, 2020

  1. Fix [issue 337](#337) regression: false positive mosaic detection, se… 

    …e IM_0006_T1.dcm from dcm_qa_enh
    @neurolabusc
    neurolabusc committed Feb 3, 2020
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Commits on Feb 7, 2020

  1. Handle enahnced DICOMs lacking 0020,9157 (#372)

    @neurolabusc
    neurolabusc committed Feb 7, 2020
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Commits on Feb 10, 2020

  1. 3D EPI TR (#369) 3D phase (#371) Enhanced ordering (#372 (comment))

    @neurolabusc
    neurolabusc committed Feb 10, 2020
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Commits on Feb 14, 2020

  1. GE slice interpolation (#373)

    @neurolabusc
    neurolabusc committed Feb 14, 2020
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  2. Estimate Philips EffectiveEchoSpacing (nipreps/sdcflows#5)

    @neurolabusc
    neurolabusc committed Feb 14, 2020
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Commits on Feb 16, 2020

  1. GE PET with variable slice intensity (#374)

    @neurolabusc
    neurolabusc committed Feb 16, 2020
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Commits on Feb 20, 2020

  1. Citation (#102)

    @neurolabusc
    neurolabusc committed Feb 20, 2020
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Commits on Feb 25, 2020

  1. TR for Philips 3D EPI (#369)

    @neurolabusc
    neurolabusc committed Feb 25, 2020
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Commits on Mar 4, 2020

  1. Philips effective echo spacing formula ambiguous (#377)

    @neurolabusc
    neurolabusc committed Mar 4, 2020
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Commits on Mar 10, 2020

  1. Support InversionTImes (0018,9079) tag (#380)

    @neurolabusc
    neurolabusc committed Mar 10, 2020
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Commits on Mar 11, 2020

  1. Philips partial Fourier (#377)

    @neurolabusc
    neurolabusc committed Mar 11, 2020
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Commits on Mar 12, 2020

  1. Consistent echo naming (#381)

    @neurolabusc
    neurolabusc committed Mar 12, 2020
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  2. Only report "multiple inversion times" if 0018,9079 values differ (e.… 

    …g. Bangalore data in https://github.com/neurolabusc/dcm_qa_philips)
    @neurolabusc
    neurolabusc committed Mar 12, 2020
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Commits on Mar 14, 2020

  1. Detect catastrophic anonymization (#383)

    @neurolabusc
    neurolabusc committed Mar 14, 2020
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Commits on Mar 16, 2020

  1. Experimental solution for issue 384 (#384)

    @neurolabusc
    neurolabusc committed Mar 16, 2020
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Commits on Mar 20, 2020

  1. Experimental Canon DICOM support (#388)

    @neurolabusc
    neurolabusc committed Mar 20, 2020
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  2. Cleanup

    @neurolabusc
    neurolabusc committed Mar 20, 2020
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Commits on Mar 23, 2020

  1. Philips TotalReadoutTime (#377)

    @neurolabusc
    neurolabusc committed Mar 23, 2020
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Commits on Mar 31, 2020

  1. New release, EstimatedTotalReadoutTime/EstimatedEffectiveEchoSpacing (#… 

    …377)
    @neurolabusc
    neurolabusc committed Mar 31, 2020
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