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Development #389

Merged
merged 49 commits into from
Mar 31, 2020
Merged

Development #389

merged 49 commits into from
Mar 31, 2020

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neurolabusc
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New stable release (20200331):

neurolabusc and others added 30 commits September 11, 2019 12:44
@neurolabusc
Guess mosaics (#337)
0a3e542
@neurolabusc
Avoid divide by zero regression
b7a794a
@neurolabusc
'original' datatype for AFNI (https://afni.nimh.nih.gov/afni/communit…
0736d6c 
…y/board/read.php?1,159214,159214#msg-159214)
@neurolabusc
Explicit exit code for missing input/output folder (https://discourse…
325c87b 
….slicer.org/t/import-error-in-dicom-module/8511/7)
@neurolabusc
Detect GE Multi-Band (#336)
b73e1d2
@neurolabusc
Improved slice re-ordering, handle missing instance numbers (#341)
fa49f14
@neurolabusc
Apple notarizing command-line tools (https://mjtsai.com/blog/2019/06/…
3792bc1 
…17/notarizing-command-line-tools-for-macos-10-15/)
@neurolabusc
Windows NRRD gzip with '/' as file separator (https://discourse.slice…
ec20e50 
…r.org/t/dti-averaging-of-b0-images/8639/7)
@ningfei
Update AppVeyor setting to build all branches.
b3e92f6
@ningfei
Update CI status badges.
85a0b2c
@ningfei
Fix 'max' not declared error.
a820e84
@neurolabusc
Update documentation
1e1fe8a
@neurolabusc
Terse mode (#344)
0848baa
@neurolabusc
BIDS ImageType tag for enhanced images (#345)
1e5e4c4
@neurolabusc
Ensure sliceMMarray is initialized (#347)
3a003b7
@neurolabusc
https://github.com/rordenlab/dcm2niix/issues/349
29c17af
@neurolabusc
Create bval/bvec files for Siemens Diffusion sequences without gradie…
3595ea9 
…nt tables (#352)
@neurolabusc
Detect single volume B=0 diffusion (#352)
1444998
@neurolabusc
Resolve discrepancy between tags (0020,1002; 0021,104F; 0054,0081) (#306
fe87f79 
)
@neurolabusc
Report slice filenames (#353)
975a847
@neurolabusc
GE Multi-Echo kludge (#359)
37defa8
@neurolabusc
Add notes for Philips functional sequences with missing slices (#357)
f9a0a6b
@neurolabusc
Fix regression for Windows OS
3c1a9e3
@neurolabusc
C arrays indexed from zero (#353 (comment))
de9ff51
@neurolabusc
Add support for Toshiba DWI (#362).
fb82803
@neurolabusc
Philips research DWI sequences can generate unique scaling factor for…
3197826 
… each volume. Allow '-m y' to stack these.
@neurolabusc
Philips slice-by-slice intensity scaling (#363)
ca47499
@neurolabusc
Modify GEIIS thumbnail rejection heuristic (#367)
c0a3731
@ningfei
Update CMake message on static runtime error.
803ee87
@ningfei
Suppress format overflow warning for GCC 7.1+.
9d4911f
@neurolabusc
Fix [issue 337](#337) regression: false positive mosaic detection, se…
0be430f 
…e IM_0006_T1.dcm from dcm_qa_enh
@neurolabusc
Handle enahnced DICOMs lacking 0020,9157 (#372)
5390c66
@neurolabusc
3D EPI TR (#369) 3D phase (#371) Enhanced ordering (#372 (comment))
96776fb
@neurolabusc
GE slice interpolation (#373)
a49840e
@neurolabusc
Estimate Philips EffectiveEchoSpacing (nipreps/sdcflows#5)
ac2577f
@neurolabusc
GE PET with variable slice intensity (#374)
1fd360b
@neurolabusc
Citation (#102)
f1f38fe
@neurolabusc
TR for Philips 3D EPI (#369)
17870a8
@neurolabusc
Philips effective echo spacing formula ambiguous (#377)
e6dca89
@neurolabusc
Support InversionTImes (0018,9079) tag (#380)
dc0582f
@neurolabusc
Philips partial Fourier (#377)
a77fc3d
@neurolabusc
Consistent echo naming (#381)
4660e75
@neurolabusc
Only report "multiple inversion times" if 0018,9079 values differ (e.…
aa83d64 
…g. Bangalore data in https://github.com/neurolabusc/dcm_qa_philips)
@neurolabusc
Detect catastrophic anonymization (#383)
6040de5
@neurolabusc
Experimental solution for issue 384 (#384)
616d0be
@neurolabusc
Experimental Canon DICOM support (#388)
c8de63a
@neurolabusc
Cleanup
51faa27
@neurolabusc
Philips TotalReadoutTime (#377)
3c96681
@neurolabusc
New release, EstimatedTotalReadoutTime/EstimatedEffectiveEchoSpacing (#…
ab26453 
…377)
@neurolabusc neurolabusc merged commit 110dc88 into master Mar 31, 2020
@tashrifbillah tashrifbillah mentioned this pull request Apr 27, 2020
Closed
@oesteban oesteban mentioned this pull request Nov 1, 2021
Open
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2 participants
@neurolabusc @ningfei