build(docker): upgrade base image to ubuntu 24.04

.github/workflows/ci.yml

@@ -10,7 +10,7 @@ on: [push, pull_request]
 
 jobs:
   lint-commitlint:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -36,7 +36,7 @@ jobs:
           ./run-tests.sh --check-commitlint ${{ github.event.pull_request.base.sha }} ${{ github.event.pull_request.head.sha }} ${{ github.event.pull_request.number }}
 
   lint-shellcheck:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -47,15 +47,15 @@ jobs:
           ./run-tests.sh --check-shellcheck
 
   lint-black:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.8"
+          python-version: "3.12"
 
       - name: Check Python code formatting
         run: |
@@ -64,15 +64,15 @@ jobs:
           ./run-tests.sh --check-black
 
   lint-flake8:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.8"
+          python-version: "3.12"
 
       - name: Check compliance with pep8, pyflakes and circular complexity
         run: |
@@ -81,15 +81,15 @@ jobs:
           ./run-tests.sh --check-flake8
 
   lint-pydocstyle:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.8"
+          python-version: "3.12"
 
       - name: Check compliance with Python docstring conventions
         run: |
@@ -98,15 +98,15 @@ jobs:
           ./run-tests.sh --check-pydocstyle
 
   lint-check-manifest:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.8"
+          python-version: "3.12"
 
       - name: Check Python manifest completeness
         run: |
@@ -115,15 +115,15 @@ jobs:
           ./run-tests.sh --check-manifest
 
   docs-sphinx:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.8"
+          python-version: "3.12"
 
       - name: Install system dependencies
         run: |
@@ -134,35 +134,35 @@ jobs:
       - name: Install system dependencies
         run: |
           sudo apt-get update -y
-          sudo apt-get install python3-dev graphviz libgraphviz-dev pkg-config
+          sudo apt-get install python3.12-dev graphviz libgraphviz-dev pkg-config uuid-dev
 
       - name: Install Python dependencies
         run: |
-          pip install --upgrade pip 'setuptools<65.6' py wheel
+          pip install --upgrade pip 'setuptools' py wheel
           pip install -e .[all]
 
       - name: Run Sphinx documentation with doctests
         run: ./run-tests.sh --check-sphinx
 
   python-tests:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.8"
+          python-version: "3.12"
 
       - name: Install system dependencies
         run: |
           sudo apt-get update -y
-          sudo apt-get install python3-dev graphviz libgraphviz-dev pkg-config
+          sudo apt-get install python3.12-dev graphviz libgraphviz-dev pkg-config uuid-dev
 
       - name: Install Python dependencies
         run: |
-          pip install --upgrade pip 'setuptools<65.6' py
+          pip install --upgrade pip 'setuptools' py
           pip install twine wheel
           pip install -e .[all]
 
@@ -176,7 +176,7 @@ jobs:
           files: coverage.xml
 
   lint-dockerfile:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -185,7 +185,7 @@ jobs:
         run: ./run-tests.sh --check-dockerfile
 
   docker-build:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -194,7 +194,7 @@ jobs:
         run: ./run-tests.sh --check-docker-build
 
   release-docker:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-24.04
     if: >
       vars.RELEASE_DOCKER == 'true' &&
       github.event_name == 'push' &&

.readthedocs.yaml

@@ -7,9 +7,9 @@
 version: 2
 
 build:
-  os: ubuntu-22.04
+  os: ubuntu-24.04
   tools:
-    python: "3.8"
+    python: "3.12"
 
 sphinx:
   configuration: docs/conf.py

AUTHORS.md

@@ -9,5 +9,6 @@ The list of contributors in alphabetical order:
 - [Marco Donadoni](https://orcid.org/0000-0003-2922-5505)
 - [Marco Vidal](https://orcid.org/0000-0002-9363-4971)
 - [Sinclert Perez](https://www.linkedin.com/in/sinclert)
+- [Stavros Moiras](https://orcid.org/0009-0005-4331-096X)
 - [Tibor Simko](https://orcid.org/0000-0001-7202-5803)
 - [Vladyslav Moisieienkov](https://orcid.org/0000-0001-9717-0775)

Dockerfile

@@ -5,18 +5,16 @@
 # under the terms of the MIT License; see LICENSE file for more details.
 
 # Use Ubuntu LTS base image
-FROM docker.io/library/ubuntu:20.04
+FROM docker.io/library/ubuntu:24.04
 
 # Recognise target architecture
 ARG TARGETARCH
 
 # Use default answers in installation commands
 ENV DEBIAN_FRONTEND=noninteractive
 
-# Use distutils provided by the standard Python library instead of the vendored one in
-# setuptools, so that editable installations are stored in the right directory.
-# See https://github.com/pypa/setuptools/issues/3301
-ENV SETUPTOOLS_USE_DISTUTILS=stdlib
+# Allow pip to install packages in the system site-packages dir
+ENV PIP_BREAK_SYSTEM_PACKAGES=true
 
 # Prepare list of Python dependencies
 COPY requirements.txt /code/
@@ -29,20 +27,21 @@ RUN apt-get update -y && \
         curl \
         g++ \
         gcc \
+        git \
         gnupg2 \
         graphviz \
         graphviz-dev \
         imagemagick \
         krb5-config \
         krb5-user \
-        libauthen-krb5-perl \
+        libauthen-krb5-simple-perl \
         libkrb5-dev \
         libssl-dev \
         make \
         pkg-config \
-        python3-dev \
+        python3.12-dev \
         python3-pip \
-        python3.8 \
+        python3.12 \
         uuid-dev \
         vim-tiny && \
     # Install xrootd
@@ -60,17 +59,18 @@ RUN apt-get update -y && \
           libxrootd-client-dev \
           xrootd-client) \
     fi && \
-    pip install --no-cache-dir --upgrade pip 'setuptools<71' && \
+    pip install --no-cache-dir --upgrade setuptools && \
     pip install --no-cache-dir -r /code/requirements.txt && \
     apt-get remove -y \
         cmake \
         g++ \
         gcc \
+        git \
         graphviz-dev \
         libssl-dev \
         make \
         pkg-config \
-        python3-dev \
+        python3.12-dev \
         uuid-dev && \
     apt-get autoremove -y && \
     apt-get clean && \
@@ -82,7 +82,7 @@ COPY . /code
 
 # Add magick wrapper command to simulate ImageMagick v7 that is necessary by Snakemake
 # to produce thumbnails in generated reports. The wrapper simply passes conversion
-# requests to ImageMagick v6 available on Ubuntu 20.04.
+# requests to ImageMagick v6 available on Ubuntu 24.04.
 COPY scripts/magick-wrapper.sh /usr/local/bin/magick
 RUN chmod +x /usr/local/bin/magick
 
@@ -92,14 +92,22 @@ ARG DEBUG=0
 RUN if [ "${DEBUG}" -gt 0 ]; then pip install --no-cache-dir -e ".[debug,xrootd]"; else pip install --no-cache-dir ".[xrootd]"; fi;
 
 # Are we building with locally-checked-out shared modules?
-# hadolint ignore=DL3013
-RUN if test -e modules/reana-commons; then \
+# hadolint ignore=DL3008,DL3013
+RUN apt-get update -y && \
+    apt-get install -y --no-install-recommends \
+      git && \
+    if test -e modules/reana-commons; then \
       if [ "${DEBUG}" -gt 0 ]; then \
         pip install --no-cache-dir -e "modules/reana-commons[snakemake_reports]" --upgrade; \
       else \
         pip install --no-cache-dir "modules/reana-commons[snakemake_reports]" --upgrade; \
       fi \
-    fi
+    fi && \
+    apt-get remove -y \
+        git && \
+    apt-get autoremove -y && \
+    apt-get clean && \
+    rm -rf /var/lib/apt/lists/*
 
 # Check for any broken Python dependencies
 RUN pip check