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Add colocalization measures #488

Merged
merged 10 commits into from
Feb 2, 2023
Merged

Add colocalization measures #488

merged 10 commits into from
Feb 2, 2023

Commits on Jan 25, 2023

  1. add colocalization metrics 

    ported from scikit-image/scikit-image#6189
    @grlee77
    grlee77 committed Jan 25, 2023
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  2. use kernel fusion for manders_overlap_coeff calculation

    @grlee77
    grlee77 committed Jan 25, 2023
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  3. add colocalization metrics to the benchmarking scripts

    @grlee77
    grlee77 committed Jan 25, 2023
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  4. avoid overhead of sanity checks in Pearson R 

    These are unlikely to occur in real world use cases with images.
    @grlee77
    grlee77 committed Jan 25, 2023
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  5. pep8 fixes

    @grlee77
    grlee77 committed Jan 25, 2023
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  6. fix import order

    @grlee77
    grlee77 committed Jan 25, 2023
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Commits on Feb 1, 2023

  1. apply isort

    @grlee77
    grlee77 committed Feb 1, 2023
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  2. Merge remote-tracking branch 'upstream/branch-23.02' into add-colocal… 

    …ization-metrics
    @grlee77
    grlee77 committed Feb 1, 2023
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Commits on Feb 2, 2023

  1. Update python/cucim/src/cucim/skimage/measure/_colocalization.py 

    Co-authored-by: Gigon Bae <[email protected]>
    @grlee77 @gigony
    grlee77 and gigony authored Feb 2, 2023
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  2. Merge branch 'branch-23.02' into add-colocalization-metrics

    @grlee77
    grlee77 authored Feb 2, 2023
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