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Release/0.7.0 #181

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Feb 7, 2024
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Release/0.7.0 #181

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b7f7dbc
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Swandog Feb 6, 2024
1b335d7
Parsed the `CHANGELOG` and assigned items to the new releases
Swandog Feb 7, 2024
8937715
Updated Citation entries
Swandog Feb 7, 2024
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35 changes: 28 additions & 7 deletions CHANGELOG.md
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Expand Up @@ -7,20 +7,39 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

## [Unreleased]

## [python-0.7.0] - 2024-02-07

### Added

- `Engine.update` uses `tqdm.auto` for progress bar reporting, to support progress bars in notebooks
- Added `flat_columns` option to `Engine` constructor to enable creating engines with one view
- Added `variability` method to `Engine`

### Changed

- Improved errors in type conversions.
- Rearranged test execution

### Fixed

- Default transition sets now hit all required transitions
- Fixed typo in internal `Dimension` class

## [rust-0.7.0] - 2024-02-07

### Added

- `DataParseError::CodebookAndDataRowsMismatch` variant for when the number of rows in the codebook and the number of rows in the data do not match.
- `DataParseError::DataFrameMissingColumn` variant for when a column is in the codebook but not in the initial dataframe.
- Python's `Engine.update` uses `tqdm.auto` for progress bar reporting.
- Added `flat_columns` option to pylace `Engine` constructor to enable creating engines with one view
- Added `variability` method to `OraceT` trait

### Changed

- Added parallelism to `Slice` row reassignment kernel. Run time is ~6x faster.
- (Python) Improved errors in type conversions.

### Fixed
- Initializing an engine with a codebook that has a different number of rows than the data will result in an error instead of printing a bunch on nonsense.
- Pylace default transition sets didn't hit all required transitions
- Typo in pylace internal `Dimension` class

- Initializing an engine with a codebook that has a different number of rows than the data will result in an error instead of printing a bunch of nonsense.

## [python-0.6.0] - 2024-01-23

Expand Down Expand Up @@ -242,7 +261,9 @@ Initial release on [PyPi](https://pypi.org/)

Initial release on [crates.io](https://crates.io/)

[unreleased]: https://github.com/promised-ai/lace/compare/python-0.6.0...HEAD
[unreleased]: https://github.com/promised-ai/lace/compare/python-0.7.0...HEAD
[python-0.7.0]: https://github.com/promised-ai/lace/compare/python-0.6.0...python-0.7.0
[rust-0.7.0]: https://github.com/promised-ai/lace/compare/rust-0.6.0...rust-0.7.0
[python-0.6.0]: https://github.com/promised-ai/lace/compare/python-0.5.0...python-0.6.0
[rust-0.6.0]: https://github.com/promised-ai/lace/compare/rust-0.5.0...rust-0.6.0
[python-0.5.0]: https://github.com/promised-ai/lace/compare/python-0.4.1...python-0.5.0
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4 changes: 2 additions & 2 deletions CITATION.cff
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Expand Up @@ -34,5 +34,5 @@ keywords:
- Bayesian
- Machine Learning
license: BUSL-1.1
version: 0.6.0
date-released: '2024-01-23'
version: 0.7.0
date-released: '2024-02-07'
4 changes: 2 additions & 2 deletions book/lace_preprocess_mdbook_yaml/Cargo.toml
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Expand Up @@ -16,8 +16,8 @@ path = "src/main.rs"
anyhow = "1.0"
clap = "4.2"
env_logger = "0.10"
lace_codebook = { path = "../../lace/lace_codebook", version = "0.5.0" }
lace_stats = { path = "../../lace/lace_stats", version = "0.2.1" }
lace_codebook = { path = "../../lace/lace_codebook", version = "0.6.0" }
lace_stats = { path = "../../lace/lace_stats", version = "0.3.0" }
log = "0.4"
mdbook = "0.4"
pulldown-cmark = { version = "0.9", default-features = false }
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4 changes: 2 additions & 2 deletions cli/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "lace-cli"
version = "0.6.0"
version = "0.7.0"
authors = ["Promised AI"]
edition = "2021"
rust-version = "1.62.0"
Expand All @@ -17,7 +17,7 @@ name = "lace"
path = "src/main.rs"

[dependencies]
lace = { path = "../lace", version = "0.6.0", features = ["formats", "ctrlc_handler"]}
lace = { path = "../lace", version = "0.7.0", features = ["formats", "ctrlc_handler"]}
clap = { version = "4.3.17", features = ["derive"] }
env_logger = "0.10"
serde_yaml = "0.9.4"
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16 changes: 8 additions & 8 deletions lace/Cargo.lock
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16 changes: 8 additions & 8 deletions lace/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "lace"
version = "0.6.0"
version = "0.7.0"
authors = ["Promised AI"]
build = "build.rs"
edition = "2021"
Expand Down Expand Up @@ -31,14 +31,14 @@ name = "lace"
path = "src/lib.rs"

[dependencies]
lace_cc = { path = "lace_cc", version = "0.5.0" }
lace_utils = { path = "lace_utils", version = "0.2.0" }
lace_stats = { path = "lace_stats", version = "0.2.1" }
lace_codebook = { path = "lace_codebook", version = "0.5.0", default_features=false}
lace_geweke = { path = "lace_geweke", version = "0.2.1" }
lace_cc = { path = "lace_cc", version = "0.6.0" }
lace_utils = { path = "lace_utils", version = "0.3.0" }
lace_stats = { path = "lace_stats", version = "0.3.0" }
lace_codebook = { path = "lace_codebook", version = "0.6.0", default_features=false}
lace_geweke = { path = "lace_geweke", version = "0.3.0" }
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Note: I didn't change the version of lace_consts since the only change in it was a PATCH version bump in the rv dependency. I think that shouldn't require publishing a new version since Cargo should do the right thing and update the patch by default when people build it.

lace_consts = { path = "lace_consts", version = "0.2.1" }
lace_data = { path = "lace_data", version = "0.2.0" }
lace_metadata = { path = "lace_metadata", version = "0.5.0" }
lace_data = { path = "lace_data", version = "0.3.0" }
lace_metadata = { path = "lace_metadata", version = "0.6.0" }
dirs = { version="5", optional = true}
num = "0.4"
rand_xoshiro = { version="0.6", features = ["serde1"] }
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12 changes: 6 additions & 6 deletions lace/lace_cc/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "lace_cc"
version = "0.5.0"
version = "0.6.0"
authors = ["Promised AI"]
edition = "2021"
exclude = ["tests/*", "resources/test/*", "target/*"]
Expand All @@ -10,12 +10,12 @@ repository = "https://github.com/promised-ai/lace"
description = "Core of the Lace cross-categorization engine library"

[dependencies]
lace_utils = { path = "../lace_utils", version = "0.2.0" }
lace_stats = { path = "../lace_stats", version = "0.2.1" }
lace_geweke = { path = "../lace_geweke", version = "0.2.1" }
lace_utils = { path = "../lace_utils", version = "0.3.0" }
lace_stats = { path = "../lace_stats", version = "0.3.0" }
lace_geweke = { path = "../lace_geweke", version = "0.3.0" }
lace_consts = { path = "../lace_consts", version = "0.2.1" }
lace_data = { path = "../lace_data", version = "0.2.0" }
lace_codebook = { path = "../lace_codebook", version = "0.5.0" }
lace_data = { path = "../lace_data", version = "0.3.0" }
lace_codebook = { path = "../lace_codebook", version = "0.6.0" }
rand = {version="0.8", features=["serde1"]}
rayon = "1.5"
serde = { version = "1", features = ["derive"] }
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8 changes: 4 additions & 4 deletions lace/lace_codebook/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "lace_codebook"
version = "0.5.0"
version = "0.6.0"
authors = ["Promised.ai"]
edition = "2021"
license = "BUSL-1.1"
Expand All @@ -10,9 +10,9 @@ description = "Contains the Lace codebook specification as well as utilities for

[dependencies]
lace_consts = { path = "../lace_consts", version = "0.2.1" }
lace_stats = { path = "../lace_stats", version = "0.2.1" }
lace_utils = { path = "../lace_utils", version = "0.2.0" }
lace_data = { path = "../lace_data", version = "0.2.0" }
lace_stats = { path = "../lace_stats", version = "0.3.0" }
lace_utils = { path = "../lace_utils", version = "0.3.0" }
lace_data = { path = "../lace_data", version = "0.3.0" }
serde = { version = "1", features = ["derive"] }
serde_yaml = "0.9.4"
thiserror = "1.0.11"
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4 changes: 2 additions & 2 deletions lace/lace_data/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "lace_data"
version = "0.2.0"
version = "0.3.0"
authors = ["Promised AI"]
edition = "2021"
license = "BUSL-1.1"
Expand All @@ -9,7 +9,7 @@ repository = "https://github.com/promised-ai/lace"
description = "Data definitions and data container definitions for Lace"

[dependencies]
lace_utils = { path = "../lace_utils", version = "0.2.0" }
lace_utils = { path = "../lace_utils", version = "0.3.0" }
serde = { version = "1", features = ["derive"] }
thiserror = "1.0.19"

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6 changes: 3 additions & 3 deletions lace/lace_geweke/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "lace_geweke"
version = "0.2.1"
version = "0.3.0"
authors = ["Promised AI"]
edition = "2021"
license = "BUSL-1.1"
Expand All @@ -9,8 +9,8 @@ repository = "https://github.com/promised-ai/lace"
description = "Geweke tester for Lace"

[dependencies]
lace_stats = { path = "../lace_stats", version = "0.2.1" }
lace_utils = { path = "../lace_utils", version = "0.2.0" }
lace_stats = { path = "../lace_stats", version = "0.3.0" }
lace_utils = { path = "../lace_utils", version = "0.3.0" }
serde = { version = "1", features = ["derive"] }
serde_yaml = "0.9.4"
indicatif = "0.17"
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10 changes: 5 additions & 5 deletions lace/lace_metadata/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "lace_metadata"
version = "0.5.0"
version = "0.6.0"
authors = ["Promised AI"]
edition = "2021"
license = "BUSL-1.1"
Expand All @@ -9,10 +9,10 @@ repository = "https://github.com/promised-ai/lace"
description = "Archive of the metadata (savefile) formats for Lace. In charge of versioning and conversion."

[dependencies]
lace_stats = { path = "../lace_stats", version = "0.2.1" }
lace_data = { path = "../lace_data", version = "0.2.0" }
lace_codebook = { path = "../lace_codebook", version = "0.5.0" }
lace_cc = { path = "../lace_cc", version = "0.5.0" }
lace_stats = { path = "../lace_stats", version = "0.3.0" }
lace_data = { path = "../lace_data", version = "0.3.0" }
lace_codebook = { path = "../lace_codebook", version = "0.6.0" }
lace_cc = { path = "../lace_cc", version = "0.6.0" }
serde = { version = "1", features = ["derive"] }
serde_yaml = "0.9.4"
serde_json = "1"
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6 changes: 3 additions & 3 deletions lace/lace_stats/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "lace_stats"
version = "0.2.1"
version = "0.3.0"
rust-version = "1.62.0"
authors = ["Promised AI"]
edition = "2021"
Expand All @@ -10,9 +10,9 @@ repository = "https://github.com/promised-ai/lace"
description = "Contains component model and hyperprior specifications"

[dependencies]
lace_utils = { path = "../lace_utils", version = "0.2.0" }
lace_utils = { path = "../lace_utils", version = "0.3.0" }
lace_consts = { path = "../lace_consts", version = "0.2.1" }
lace_data = { path = "../lace_data", version = "0.2.0" }
lace_data = { path = "../lace_data", version = "0.3.0" }
special = "0.10"
rand = {version="0.8", features=["serde1"]}
itertools = "0.12"
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2 changes: 1 addition & 1 deletion lace/lace_utils/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "lace_utils"
version = "0.2.0"
version = "0.3.0"
authors = ["Promised AI"]
edition = "2021"
license = "BUSL-1.1"
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6 changes: 3 additions & 3 deletions pylace/Cargo.toml
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@@ -1,6 +1,6 @@
[package]
name = "pylace"
version = "0.6.0"
version = "0.7.0"
edition = "2021"
license = "BUSL-1.1"

Expand All @@ -9,8 +9,8 @@ name = "lace"
crate-type = ["cdylib"]

[dependencies]
lace = { path = "../lace", version="0.6.0" }
lace_utils = { path = "../lace/lace_utils", version="0.2.0" }
lace = { path = "../lace", version="0.7.0" }
lace_utils = { path = "../lace/lace_utils", version="0.3.0" }
rand = "0.8.5"
rand_xoshiro = "0.6.0"
pyo3 = { version = "0.20", features = ["extension-module"] }
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2 changes: 1 addition & 1 deletion pylace/pyproject.toml
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Expand Up @@ -4,7 +4,7 @@ build-backend = "maturin"

[project]
name = "pylace"
version = "0.6.0"
version = "0.7.0"
description = "A probabalistic programming ML tool for science"
requires-python = ">=3.8"
classifiers = [
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