Updating the SGD genes file

Jump to bottom Edit New page

Kim Rutherford edited this page Dec 8, 2024 · 3 revisions

(re-)creating the SGD data file

In the pombase-legacy directory, run:

uv run --python 3.9 --with pandas --with intermine --with requests ./etc/query_yeastmine_genes.py > /var/pomcur/sources/sgd_yeastmine_genes.tsv

or if the InterMine python package is installed:

python3.9 ./etc/query_yeastmine_genes.py > /var/pomcur/sources/sgd_yeastmine_genes.tsv