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Merge PR #19981, commits were: * Fixed wrong filename * Fixed wrong path * Bumped slivar version
Merge PR #19975, commits were: * Rebuild MOABS in OSX
Merge PR #19976, commits were: * Update meta.yaml * Update meta.yaml * skip macos build * Add DCMAKE_OSX_SYSROOT for macos * Remove submodule init from build.sh * Replace git_url with url * Fix conda issues, create release tar bar * Add Conterminator package
Merge PR #19982, commits were: * update trnanalysis=0.1.10
Merge PR #19984, commits were: * Bump build. * Use extended base to enable /etc/resolv.conf.
Merge PR #19954, commits were: * query service removed in version 7.0.0 * Update hca to 7.0.0
Merge PR #19965, commits were: * Indicate llvm-openmp is for osx * require openMP for macOS * remove ntCard from build-fail-blacklist * update ntCard to 1.2.0
Merge PR #19979, commits were: * Update meta.yaml * Update meta.yaml * add spring recipe - fix zlib * add spring recipe - fix zlib * add spring recipe - fix zlib * add spring recipe - fix zlib * add spring recipe - fix busybox test * add spring recipe - fix sed -i * add spring recipe - fix sed -i * add spring recipe
Merge PR #19988, commits were: * Remove r-bioverbs recipe * Rename package from bioverbs to acidgenerics
Merge PR #19985, commits were: * Depend on matplotlib-base instead of matplotlib The matplotlib package has been split into a matplotlib and matplotlib-base package a while ago, see conda-forge/matplotlib-feedstock#178 . The only difference is that matplotlib-base does not include on pyqt, reducing installation size significantly. Unless matplotlib’s PyQt backend is explicitly required, depending on matplotlib-base is sufficient.
Merge PR #19986, commits were: * Bump monocle3-cli to 0.0.5
Merge PR #19993, commits were: * Add scikit-learn dependency to macrel New version uses scikit-learn instead of r-randomForest, so update to that.
Merge PR #19987, commits were: * Update meta.yaml * Add dep coreutils * Add build script * Remove sort * Add phastaf
* update mykrobe build process * explicitly move mccortex binary and test it works * change python install method
Merge PR #19995, commits were: * Update meta.yaml * Update meta.yaml * not noarch * compier only in build * add {{ compiler('c') }} * Merge branch 'pyfastx' of https://github.com/bioconda/bioconda-recipes into pyfastx * build nr 0 * Merge branch 'master' into pyfastx * updated shasum * add pyfastx
Merge PR #19895, commits were: * upgrade to 0.3.1 * updating perl package version to 0.3.0 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * 'master' of https://github.com/bioconda/bioconda-recipes: (86 commits) [ci skip] Merge PR 19885 Update pyranges to 0.0.69 (#19888) Update ppanggolin to 1.0.13 (#19887) [ci skip] Merge PR 19882 [ci skip] Merge PR 19884 [ci skip] Merge PR 19883 [ci skip] Merge PR 19876 [ci skip] Merge PR 19872 [ci skip] Merge PR 19873 [ci skip] Merge PR 19875 [ci skip] Merge PR 19877 [ci skip] Merge PR 19878 [ci skip] Merge PR 19879 Update coinfinder to 1.0.2 (#19869) [ci skip] Merge PR 19470 [ci skip] Merge PR 19868 Update tb-profiler to 2.8.4 (#19866) [ci skip] Merge PR 19864 Pychopper dependency update (#19865) Add recipe for velocyto.R (#19843) ... * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * 'master' of https://github.com/bioconda/bioconda-recipes: [ci skip] Merge PR 19772 [ci skip] Merge PR 19773 MSGF+ version bump (#19769) * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * 'master' of https://github.com/bioconda/bioconda-recipes: [ci skip] Merge PR 19747 [ci skip] Merge PR 19768 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * 'master' of https://github.com/bioconda/bioconda-recipes: (2210 commits) [ci skip] Merge PR 19683 Update refgenconf to 0.6.2 (#19754) [ci skip] Merge PR 19762 [ci skip] Merge PR 19763 [ci skip] Merge PR 19760 [ci skip] Merge PR 19758 [ci skip] Merge PR 19744 [ci skip] Merge PR 19719 [ci skip] Merge PR 19751 [ci skip] Merge PR 19748 [ci skip] Merge PR 19757 [ci skip] Merge PR 19756 [ci skip] Merge PR 19753 [ci skip] Merge PR 19750 [ci skip] Merge PR 19743 [ci skip] Merge PR 19745 Update r-brio to 0.3.17 (#19662) Update kma to 1.2.21 (#19742) [ci skip] Merge PR 19739 [ci skip] Merge PR 19741 ... * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes # By Bioconda Bot (464) and others # Via Devon Ryan * 'master' of https://github.com/bioconda/bioconda-recipes: (2408 commits) Update pyega3 to 3.0.39 (#17007) Remove 5 packages from the blacklist (#17004) Update validators to 0.14.0 (#17002) Update epic2 to 0.0.39 (#17003) Update r-seurat to 3.1.0 (#17001) Update bbknn to 1.3.5 (#15908) Update sra-tools to 2.10.0 (#16998) Add Unified Variant Analysis Pipeline (UVP) for M. tuberculosis analysis Update bbmap to 38.63 (#16999) Update ncbi-vdb to 2.10.0 (#16997) add r-immunedeconv (#16103) Update rgt to 0.12.2 (#16981) python-chado 2.3.0 (#16995) build spades from source (#16937) Update n50 to 0.83 (#16994) Update picard-slim to 2.20.6 (#16993) Update picard to 2.20.6 (#16992) bcftools polysomy (#16989) Update fastq-scan to 0.4.0 (#16991) Add Logomaker (#16990) ... * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes # By Devon Ryan (31) and others # Via GitHub * 'master' of https://github.com/bioconda/bioconda-recipes: (353 commits) pysradb: update to 0.8.0 (#13815) Update: r-basejump to 0.9.11 for bcbiornaseq compat (#13805) we lost the dexseq_count script (#13806) Amptk (#13809) rebuild amptk (#13802) Sparc: add utilities (#13804) update wgbs snakepipes tools (#13793) Rebuild exonerate (#13686) Update Picard to 2.18.27. (#13795) Update to official release, add patch (#13791) Add PylProtPredictor (#13790) Update cgpbigwig to 1.0.3 (#13258) Update treetime to 0.5.3 (#13249) added shapeshifter-cli recipe (#13667) Update post-link.sh (#13767) v0.1.6 February 2019 Release (#13789) Add notes regarding binary name (#13762) update maaslin to version 0.0.5 (#13788) Gromacs 2018.6 patch (#13787) Use khronos opencl on osx (#13786) ... * Merge branch 'perl-http-simple-fixing' * perl-http-simple-fixing: Add new test and dependancies * Add new test and dependancies
* Add python dependency This *should* address issue dariober/cnv_facets#18 * Dummy update of recipe to test libcrypto.so.1.0.0 Try to rebuild the package to see if we can reproduce/fix the issue with libcrypto.so.1.0.0 described at dariober/cnv_facets#14 and also appearing at https://circleci.com/gh/bioconda/bioconda-recipes/92111?utm_campaign=vcs-integration-link&utm_medium=referral&utm_source=github-checks-link * Update meta.yaml * Try using the htslib version pinning * Update meta.yaml * Update meta.yaml * Update meta.yaml Co-authored-by: Devon Ryan <[email protected]>
* Update r-basejump to 0.12.0 * Update meta.yaml * add r-pipette * missed one * Bump pipette to v0.4.1 * Update pipette dependency Co-authored-by: Devon Ryan <[email protected]> Co-authored-by: Michael Steinbaugh <[email protected]>
* adding new recipe; haslr * update summary statement * adding python3 as dependency for haslr * fix python version * skip osx for building * Update meta.yaml * change requirements to minimum versions Co-authored-by: Devon Ryan <[email protected]>
* Update r-acidplots to 0.2.21 * Update r-acidplots to 0.2.22 * Update dependencies Co-authored-by: Michael Steinbaugh <[email protected]>
Merge PR #20004, commits were: * update ntcard to 1.2.1
Merge PR #19998, commits were: * thapbi-pict 0.6.5, has slight dep change
Merge PR #20003, commits were: * Update meta.yaml * Update meta.yaml * Update to HiCExplorer 3.4
Merge PR #20005, commits were: * Correct version number
Merge PR #19858, commits were: * Update recipe * Update r-bcbiobase to 0.6.12
* Update r-deseqanalysis to 0.2.18 * Update recipe Co-authored-by: Michael Steinbaugh <[email protected]>
Merge PR #20006, commits were: * add another test * cp compiled c progras * fix global variable usage * fix and add test * first try add recipe ltr_finder
Merge PR #20223, commits were: * Update jcvi to 1.0.2
Merge PR #18366, commits were: * Update meta.yaml * Update meta.yaml * Merge branch 'master' into bump/pronto * Update meta.yaml * Update pronto to 1.2.0 * Update pronto to 1.1.5 * Update pronto to 1.1.4 * need to add contexter and nanoset * see if it will otherwise install * Merge branch 'master' into bump/pronto * update pronto recipe * Update pronto to 1.1.3 * Update pronto to 1.1.2 * Update pronto to 1.1.1
Merge PR #20228, commits were: * Bump bowtie2 to 2.3.5.1
Merge PR #20227, commits were: * Update bx-python to 0.8.7
Merge PR #20229, commits were: * Update jcvi to 1.0.3
Merge PR #20230, commits were: * Jbrowse 1.16.8
Merge PR #20225, commits were: * dependencies * build command * udpates * Add dependency r-ape * Add TransPhylo
Merge PR #20040, commits were: * patch shebang * Update cdna_cupcake to 10.0.1 * Update cdna_cupcake to 10.0.0
Merge PR #16466, commits were: * Update meta.yaml * Merge branch 'master' into bump/ephemeris * Update ephemeris to 0.10.4 * Update meta.yaml * Update ephemeris to 0.10.3
Merge PR #20039, commits were: * Update meta.yaml * Merge branch 'master' into bump/planemo * Update planemo to 0.70.0
Merge PR #20233, commits were: * Update chromosight to 0.4.0
Merge PR #20231, commits were: * Update r-transphylo to 1.3.2
Merge PR #20241, commits were: * Update meta.yaml * fix * Merge branch 'master' into seacr * requires version in script name * Update meta.yaml update recipe to 1.3
* Update r-phylosignal to 1.3 * remove r-phylosignal and r-raceid, they're in conda-forge Co-authored-by: Devon Ryan <[email protected]>
Merge PR #20140, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * Delete build.sh * Add RANN.L1 in build.sh Signed-off-by: Vivek Rai <[email protected]> * Add r-liger Signed-off-by: Vivek Rai <[email protected]>
Merge PR #20243, commits were: * Update hca to 7.0.1
Merge PR #20239, commits were: * Update kallisto to 0.46.2
Merge PR #20242, commits were: * Update meta.yaml * Update fastobo to 0.7.1
Merge PR #20250, commits were: * 1.0.4 * Update screed to 1.0.3
Merge PR #20249, commits were: * Update caper to 0.6.4
Merge PR #20251, commits were: * Update clair to 2.0.7
Merge PR #20246, commits were: * Update bam2fasta to 1.0.4
Merge PR #20248, commits were: * New MMseqs2 Release 11-e1a1c
Merge PR #20252, commits were: * Fixed old 1.0.4 version jar to 1.0.5 * Updated jmztab-m to 1.0.5
pierrebarbera
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Dec 16, 2020
Merge PR bioconda#25204, commits were: * Adds GATK 3.5 to gatk recipe * Merge pull request #1 from bioconda/master Get latest GATK recipe
pierrebarbera
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Dec 16, 2020
Merge PR bioconda#25335, commits were: * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Update meta.yaml * Merge pull request #1 from bioconda/master Merging changes from bioconda master branch
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ℹ️
Bioconda has finished the GCC7 migration. If you are dealing with C/C++ or Python package it can be that you need to rebuild other dependent packages. Bioconda utils - update-pinning will assist you with that. If you have any questions please use issue 13578.