2.2.0

2.2.0 - 2024/10/21

ADDED

• Modified the template for input csv file to include a sample_name column in addition to sample in-line with changes to IRIDA-Next update as seen with the speciesabundance pipeline. (PR 26)

  • sample_name special characters will be replaced with "_"
  • If no sample_name is supplied in the column sample will be used
  • To avoid repeat values for sample_name all sample_name values will be suffixed with the unique sample value from the input file

CHANGED

• Fixed linting issues in CI caused by nf-core 3.0.1

2.1.1

2.1.1 - 2024/08/21

CHANGED

• Container registry for aborview switched from docker.io to quay.io/biocontainers (python:3.11.6 to python:3.12)

2.1.0

2.1.0 - 2024/07/09

Added

• Support for including contextual metadata in the input samplesheet
• ArborView HTML app functionality for viewing dendograms with contextual metadata

2.0.2

2.0.2 - 2024/05/21

Added

• Support for compressed (GZIP-formatted) reference files.

2.0.1

2.0.1 - 2024/02/23

Changed

• Pinned Nextflow plugins to specific versions ([email protected] and [email protected])

2.0.0

2.0.0 - 2024/02/14

Added

• The initial release of phac-nml/snvphylnfc as a Nextflow pipeline follwing nf-core pipeline standards.

Changed

• Migrated SNVPhyl to a Nextflow pipeline.
• Updated the major SNVPhyl release version from 1 to 2 in order to reflect the migration from a Galaxy-based pipeline to a Nextflow-based pipeline.